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Transmembrane helices for haein (Haemophilus influenzae)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

263 HI0299 1 in 83 |ali|phd|phdHtm| 149 7 9 -7.10 35 MKLTTLQTLKKGFTLIELMI

264 HI0007 1 in 38 |ali|phd|phdHtm| 312 4 3 -4.26 283 MAGTAQGVQTQDVIKISATS

265 HI1132 1 in 32 |ali|phd|phdHtm| 610 9 2 -12.60 63 MVKFNSSRKSGKSKKTIRKL

266 HI0530 1 in 16 |ali|phd|phdHtm| 342 5 3 -5.44 99 MKILGIETSCDETGVAIYDE

267 HI1725 1 in 16 |ali|phd|phdHtm| 781 9 1 -18.82 42 MTSQHSAKKSSKNTPKNNRT

268 HI0348 1 in 15 |ali|phd|phdHtm| 200 9 5 -21.77 41 MSEKKPNILKRFWQWFRKPS

269 HI1541 1 in 14 |ali|phd|phdHtm| 615 6 2 -6.30 34 MFQVLKFCWKVLCFIRDLVM

270 HI1660 1 in 12 |ali|phd|phdHtm| 376 3 3 -3.28 216 MAYTTFSQNKNDQLKEPMFF

271 HI0409 1 in 11 |ali|phd|phdHtm| 475 9 2 -32.00 38 MPVQHVKLARDRRKKRAYIK

272 HI1093 1 in 8 |ali|phd|phdHtm| 173 9 7 -23.94 31 MNPRRKSRFKLVIFVVLGIA

273 HI0032 1 in 7 |ali|phd|phdHtm| 651 7 2 -7.10 47 MNLKKFFNTPTHEPFRDKKA

274 HI0384 1 in 7 |ali|phd|phdHtm| 139 9 9 -17.66 35 MARRQRKAIKSEINIVPFLD

275 HI0038 1 in 5 |ali|phd|phdHtm| 351 8 3 -8.18 29 MKPIFGKAPPLGIRLLIAIF

276 HI0252 1 in 5 |ali|phd|phdHtm| 147 4 9 -4.90 29 MKKFDEINIIPFIDIMLVLL

277 HI0383 1 in 5 |ali|phd|phdHtm| 372 9 3 -21.57 32 MQNNRQKKGINAFAISILLH

278 HI0708 1 in 5 |ali|phd|phdHtm| 461 5 2 -5.40 164 MTALFQQLPSVDKILKTPQG

279 HI0898 1 in 5 |ali|phd|phdHtm| 390 9 3 -19.60 43 MTQIATENPSTKSVSNKTDR

280 HI1262 1 in 5 |ali|phd|phdHtm| 244 9 5 -16.32 52 MRFTKSIKFSLKCGRFFIMF

281 HI1739 1 in 5 |ali|phd|phdHtm| 309 8 3 -8.00 245 MKPTFLEFRHLKTLLALKET

282 HI0695 1 in 4 |ali|phd|phdHtm| 323 1 3 -1.81 292 MNDSILEPKHRGNVREIAAI

283 HI0457 1 in 3 |ali|phd|phdHtm| 347 9 3 -32.64 22 MKKFLIAILLLILILAGVAS

284 HI0941 1 in 3 |ali|phd|phdHtm| 101 5 9 -5.64 32 MILMFRMNKGMSFITLLFSL

285 HI1698 1 in 3 |ali|phd|phdHtm| 353 1 3 -1.32 106 MKKIGFFIMNIGSAGGTERV

286 HI0150 1 in 2 |ali|phd|phdHtm| 295 9 4 -28.68 22 MRRFLLPVIFVIAAVVYSSI

287 HI0167 1 in 2 |ali|phd|phdHtm| 244 3 4 -3.27 31 MAKFNKDSVGGTILVVLLLS

288 HI0696 1 in 2 |ali|phd|phdHtm| 1298 9 1 -12.69 47 MTEQIQPSETSPKSPEKPNK

289 HI0922 1 in 2 |ali|phd|phdHtm| 182 9 7 -14.75 33 MKYLHFTRPTIKVIFMINSI

290 HI1310 1 in 2 |ali|phd|phdHtm| 253 0 6 -0.67 44 MLLYKEKMKLLIKTSLSQWI

291 HI0330 1 in 1 |ali|phd|phdHtm| 431 9 3 -20.00 156 MNSMDKNQQSSQNELDLGLN

292 HI0421 1 in 1 |ali|phd|phdHtm| 54 1 9 -1.79 46 MASAIRNFPYPCFWKFVSMA

293 HI0438 1 in 1 |ali|phd|phdHtm| 168 9 6 -17.00 38 MSMNLLPWRTYQHQKRLRRL

294 HI0603 1 in 1 |ali|phd|phdHtm| 230 2 5 -2.26 57 MAKEQPNDLTEQLTDTPKTA

295 HI0839 1 in 1 |ali|phd|phdHtm| 341 3 3 -4.00 126 MTKMSITVNQTVLHQLVKNV

296 HI1085 1 in 1 |ali|phd|phdHtm| 167 9 6 -12.83 30 MRQTIKYEFWVGLFLLLGIG

297 HI1126 1 in 1 |ali|phd|phdHtm| 76 9 9 -20.54 74 MSLTRCPECRKKISENAENC

298 HI1152 1 in 1 |ali|phd|phdHtm| 451 9 2 -10.00 267 MKPAENSTALLKAQEQELRQ

299 HI1270 1 in 1 |ali|phd|phdHtm| 63 9 9 -21.97 30 MMRSTFLLRSPRLFFVLLVG

300 HI1327 1 in 1 |ali|phd|phdHtm| 45 9 9 -45.65 22 MMKKIFFIFALSGILAACTV

301 HI1369 1 in 1 |ali|phd|phdHtm| 839 4 2 -4.50 36 MRFFIYLIPILSRIPLAFIN

302 HI0185 1 out 219 |ali|phd|phdHtm| 378 9 2 9.52 218 MEIKQINSTIKSRAAVAFAP

303 HI0271 1 out 32 |ali|phd|phdHtm| 288 9 4 12.79 29 MEFIGKIIGVFLGWKVGGFF

304 HI0053 1 out 30 |ali|phd|phdHtm| 342 4 4 4.76 190 MKERIKAICLEKPNNVVVKE

305 HI1125 1 out 22 |ali|phd|phdHtm| 317 8 4 8.08 177 MTTQLDSLRNMTVVVADTGD

306 HI0157 1 out 19 |ali|phd|phdHtm| 316 4 3 4.68 125 MNSRILSTGSYLPSHIRTNA

307 HI0765 1 out 10 |ali|phd|phdHtm| 282 6 5 6.51 31 MKISMIFLPHFLYYTVPTFY

308 HI1133 1 out 10 |ali|phd|phdHtm| 488 8 2 8.64 319 MKKLTALFNLPELKNDIELH

309 HI1308 1 out 10 |ali|phd|phdHtm| 270 0 4 0.08 136 MTLKIAIAGAGGRMGCQLIQ

310 HI0187 1 out 9 |ali|phd|phdHtm| 109 1 9 1.84 39 MAKKSIFRAKFFLFYRTEFI

311 HI0483 1 out 8 |ali|phd|phdHtm| 156 9 7 16.12 26 MNLNATLIGQLIAFALFVWF

312 HI0938 1 out 7 |ali|phd|phdHtm| 170 1 7 1.41 27 MQKGMTLVELLIGLAIISIA

313 HI1134 1 out 7 |ali|phd|phdHtm| 457 9 2 10.56 301 MIKLSTVQLAQILQAKLIGD

314 HI0200 1 out 6 |ali|phd|phdHtm| 323 9 3 10.68 84 MLGTILHSELEKFYDPNLIV

315 HI0744 1 out 6 |ali|phd|phdHtm| 148 9 9 11.36 35 MQEFISMATEFAQKHTLLAV

316 HI1527 1 out 6 |ali|phd|phdHtm| 315 8 4 8.85 43 MERTMKNEKLPQFQPHFLAP

317 HI1544 1 out 4 |ali|phd|phdHtm| 202 2 5 2.40 98 MNHLIIFAHPNSVRSFGRAI

318 HI0149 1 out 3 |ali|phd|phdHtm| 63 9 9 19.05 33 MYLSLLLILLAWTLWLGNSL

319 HI0151 1 out 3 |ali|phd|phdHtm| 410 2 3 2.00 104 MENEMSQNGSDRDPWSKPGQ

320 HI0171 1 out 3 |ali|phd|phdHtm| 411 9 3 10.00 26 MSDSVILALGIAAFTVIVLV

321 HI1092 1 out 3 |ali|phd|phdHtm| 67 9 9 23.32 36 MFFQTWSDFFNMGGYGFYVW

322 HI1195 1 out 3 |ali|phd|phdHtm| 410 7 2 7.33 30 MDHCKQCCRLICLIQNHFMW

323 HI1378 1 out 3 |ali|phd|phdHtm| 425 3 4 3.38 38 MKKILNFIVEINLAIIISLF

324 HI1473 1 out 3 |ali|phd|phdHtm| 281 7 4 8.00 125 MIYFSDKELDDLLLEDIYRG

325 HI0127 1 out 2 |ali|phd|phdHtm| 45 9 9 31.00 31 MEDGEYGIAIAYGSILIVVM

326 HI1605 1 out 2 |ali|phd|phdHtm| 203 9 6 14.65 188 MKKIYKALISSLLLSTSINV

327 HI0096 1 out 1 |ali|phd|phdHtm| 191 8 6 8.61 77 MDLADSQITQGNEIIQSMGL

328 HI0725 1 unk 1 |ali|phd|phdHtm| 146 0 9 0.00 20 MIWIFFVIALFLVTGLTLYA

329 HI0855 1 out 1 |ali|phd|phdHtm| 115 4 9 5.00 95 MNLERLNEIEKPLLHIVKHD

330 HI0866 1 out 1 |ali|phd|phdHtm| 40 0 9 -0.85 31 MVKDNPKRSLILAIGFIIGI

331 HI0894 1 unk 1 |ali|phd|phdHtm| 382 0 4 0.00 21 MKIILVVFVLIFVGVIGFNM

332 HI0958 1 out 1 |ali|phd|phdHtm| 392 6 3 6.00 114 MIDCRYYQQNECRSCQWLEI

333 HI1003 1 out 1 |ali|phd|phdHtm| 60 0 9 0.00 36 MLIEKMHNLTNSKISKFILG

334 HI1128 1 out 1 |ali|phd|phdHtm| 58 9 9 10.36 41 MVYHNSMCTYLFYNKIGFGL

335 HI1131 1 out 1 |ali|phd|phdHtm| 107 0 9 0.00 43 MSENNKPRYPLQQILVEDLF

336 HI1326 1 out 1 |ali|phd|phdHtm| 242 9 4 17.00 222 MMVNDDFQEYVKQLVTKHRD

337 HI1329 1 out 1 |ali|phd|phdHtm| 103 0 9 0.87 55 MRKSRLSQHKQNKLIELFVA

338 HI1631 1 out 1 |ali|phd|phdHtm| 190 9 5 32.00 22 MEFSLQYITIFIFVILFLIG

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
263	HI0299	1	in	83	\|ali\|phd\|phdHtm\|	149	7	9	-7.10	35	MKLTTLQTLKKGFTLIELMI
264	HI0007	1	in	38	\|ali\|phd\|phdHtm\|	312	4	3	-4.26	283	MAGTAQGVQTQDVIKISATS
265	HI1132	1	in	32	\|ali\|phd\|phdHtm\|	610	9	2	-12.60	63	MVKFNSSRKSGKSKKTIRKL
266	HI0530	1	in	16	\|ali\|phd\|phdHtm\|	342	5	3	-5.44	99	MKILGIETSCDETGVAIYDE
267	HI1725	1	in	16	\|ali\|phd\|phdHtm\|	781	9	1	-18.82	42	MTSQHSAKKSSKNTPKNNRT
268	HI0348	1	in	15	\|ali\|phd\|phdHtm\|	200	9	5	-21.77	41	MSEKKPNILKRFWQWFRKPS
269	HI1541	1	in	14	\|ali\|phd\|phdHtm\|	615	6	2	-6.30	34	MFQVLKFCWKVLCFIRDLVM
270	HI1660	1	in	12	\|ali\|phd\|phdHtm\|	376	3	3	-3.28	216	MAYTTFSQNKNDQLKEPMFF
271	HI0409	1	in	11	\|ali\|phd\|phdHtm\|	475	9	2	-32.00	38	MPVQHVKLARDRRKKRAYIK
272	HI1093	1	in	8	\|ali\|phd\|phdHtm\|	173	9	7	-23.94	31	MNPRRKSRFKLVIFVVLGIA
273	HI0032	1	in	7	\|ali\|phd\|phdHtm\|	651	7	2	-7.10	47	MNLKKFFNTPTHEPFRDKKA
274	HI0384	1	in	7	\|ali\|phd\|phdHtm\|	139	9	9	-17.66	35	MARRQRKAIKSEINIVPFLD
275	HI0038	1	in	5	\|ali\|phd\|phdHtm\|	351	8	3	-8.18	29	MKPIFGKAPPLGIRLLIAIF
276	HI0252	1	in	5	\|ali\|phd\|phdHtm\|	147	4	9	-4.90	29	MKKFDEINIIPFIDIMLVLL
277	HI0383	1	in	5	\|ali\|phd\|phdHtm\|	372	9	3	-21.57	32	MQNNRQKKGINAFAISILLH
278	HI0708	1	in	5	\|ali\|phd\|phdHtm\|	461	5	2	-5.40	164	MTALFQQLPSVDKILKTPQG
279	HI0898	1	in	5	\|ali\|phd\|phdHtm\|	390	9	3	-19.60	43	MTQIATENPSTKSVSNKTDR
280	HI1262	1	in	5	\|ali\|phd\|phdHtm\|	244	9	5	-16.32	52	MRFTKSIKFSLKCGRFFIMF
281	HI1739	1	in	5	\|ali\|phd\|phdHtm\|	309	8	3	-8.00	245	MKPTFLEFRHLKTLLALKET
282	HI0695	1	in	4	\|ali\|phd\|phdHtm\|	323	1	3	-1.81	292	MNDSILEPKHRGNVREIAAI
283	HI0457	1	in	3	\|ali\|phd\|phdHtm\|	347	9	3	-32.64	22	MKKFLIAILLLILILAGVAS
284	HI0941	1	in	3	\|ali\|phd\|phdHtm\|	101	5	9	-5.64	32	MILMFRMNKGMSFITLLFSL
285	HI1698	1	in	3	\|ali\|phd\|phdHtm\|	353	1	3	-1.32	106	MKKIGFFIMNIGSAGGTERV
286	HI0150	1	in	2	\|ali\|phd\|phdHtm\|	295	9	4	-28.68	22	MRRFLLPVIFVIAAVVYSSI
287	HI0167	1	in	2	\|ali\|phd\|phdHtm\|	244	3	4	-3.27	31	MAKFNKDSVGGTILVVLLLS
288	HI0696	1	in	2	\|ali\|phd\|phdHtm\|	1298	9	1	-12.69	47	MTEQIQPSETSPKSPEKPNK
289	HI0922	1	in	2	\|ali\|phd\|phdHtm\|	182	9	7	-14.75	33	MKYLHFTRPTIKVIFMINSI
290	HI1310	1	in	2	\|ali\|phd\|phdHtm\|	253	0	6	-0.67	44	MLLYKEKMKLLIKTSLSQWI
291	HI0330	1	in	1	\|ali\|phd\|phdHtm\|	431	9	3	-20.00	156	MNSMDKNQQSSQNELDLGLN
292	HI0421	1	in	1	\|ali\|phd\|phdHtm\|	54	1	9	-1.79	46	MASAIRNFPYPCFWKFVSMA
293	HI0438	1	in	1	\|ali\|phd\|phdHtm\|	168	9	6	-17.00	38	MSMNLLPWRTYQHQKRLRRL
294	HI0603	1	in	1	\|ali\|phd\|phdHtm\|	230	2	5	-2.26	57	MAKEQPNDLTEQLTDTPKTA
295	HI0839	1	in	1	\|ali\|phd\|phdHtm\|	341	3	3	-4.00	126	MTKMSITVNQTVLHQLVKNV
296	HI1085	1	in	1	\|ali\|phd\|phdHtm\|	167	9	6	-12.83	30	MRQTIKYEFWVGLFLLLGIG
297	HI1126	1	in	1	\|ali\|phd\|phdHtm\|	76	9	9	-20.54	74	MSLTRCPECRKKISENAENC
298	HI1152	1	in	1	\|ali\|phd\|phdHtm\|	451	9	2	-10.00	267	MKPAENSTALLKAQEQELRQ
299	HI1270	1	in	1	\|ali\|phd\|phdHtm\|	63	9	9	-21.97	30	MMRSTFLLRSPRLFFVLLVG
300	HI1327	1	in	1	\|ali\|phd\|phdHtm\|	45	9	9	-45.65	22	MMKKIFFIFALSGILAACTV
301	HI1369	1	in	1	\|ali\|phd\|phdHtm\|	839	4	2	-4.50	36	MRFFIYLIPILSRIPLAFIN
302	HI0185	1	out	219	\|ali\|phd\|phdHtm\|	378	9	2	9.52	218	MEIKQINSTIKSRAAVAFAP
303	HI0271	1	out	32	\|ali\|phd\|phdHtm\|	288	9	4	12.79	29	MEFIGKIIGVFLGWKVGGFF
304	HI0053	1	out	30	\|ali\|phd\|phdHtm\|	342	4	4	4.76	190	MKERIKAICLEKPNNVVVKE
305	HI1125	1	out	22	\|ali\|phd\|phdHtm\|	317	8	4	8.08	177	MTTQLDSLRNMTVVVADTGD
306	HI0157	1	out	19	\|ali\|phd\|phdHtm\|	316	4	3	4.68	125	MNSRILSTGSYLPSHIRTNA
307	HI0765	1	out	10	\|ali\|phd\|phdHtm\|	282	6	5	6.51	31	MKISMIFLPHFLYYTVPTFY
308	HI1133	1	out	10	\|ali\|phd\|phdHtm\|	488	8	2	8.64	319	MKKLTALFNLPELKNDIELH
309	HI1308	1	out	10	\|ali\|phd\|phdHtm\|	270	0	4	0.08	136	MTLKIAIAGAGGRMGCQLIQ
310	HI0187	1	out	9	\|ali\|phd\|phdHtm\|	109	1	9	1.84	39	MAKKSIFRAKFFLFYRTEFI
311	HI0483	1	out	8	\|ali\|phd\|phdHtm\|	156	9	7	16.12	26	MNLNATLIGQLIAFALFVWF
312	HI0938	1	out	7	\|ali\|phd\|phdHtm\|	170	1	7	1.41	27	MQKGMTLVELLIGLAIISIA
313	HI1134	1	out	7	\|ali\|phd\|phdHtm\|	457	9	2	10.56	301	MIKLSTVQLAQILQAKLIGD
314	HI0200	1	out	6	\|ali\|phd\|phdHtm\|	323	9	3	10.68	84	MLGTILHSELEKFYDPNLIV
315	HI0744	1	out	6	\|ali\|phd\|phdHtm\|	148	9	9	11.36	35	MQEFISMATEFAQKHTLLAV
316	HI1527	1	out	6	\|ali\|phd\|phdHtm\|	315	8	4	8.85	43	MERTMKNEKLPQFQPHFLAP
317	HI1544	1	out	4	\|ali\|phd\|phdHtm\|	202	2	5	2.40	98	MNHLIIFAHPNSVRSFGRAI
318	HI0149	1	out	3	\|ali\|phd\|phdHtm\|	63	9	9	19.05	33	MYLSLLLILLAWTLWLGNSL
319	HI0151	1	out	3	\|ali\|phd\|phdHtm\|	410	2	3	2.00	104	MENEMSQNGSDRDPWSKPGQ
320	HI0171	1	out	3	\|ali\|phd\|phdHtm\|	411	9	3	10.00	26	MSDSVILALGIAAFTVIVLV
321	HI1092	1	out	3	\|ali\|phd\|phdHtm\|	67	9	9	23.32	36	MFFQTWSDFFNMGGYGFYVW
322	HI1195	1	out	3	\|ali\|phd\|phdHtm\|	410	7	2	7.33	30	MDHCKQCCRLICLIQNHFMW
323	HI1378	1	out	3	\|ali\|phd\|phdHtm\|	425	3	4	3.38	38	MKKILNFIVEINLAIIISLF
324	HI1473	1	out	3	\|ali\|phd\|phdHtm\|	281	7	4	8.00	125	MIYFSDKELDDLLLEDIYRG
325	HI0127	1	out	2	\|ali\|phd\|phdHtm\|	45	9	9	31.00	31	MEDGEYGIAIAYGSILIVVM
326	HI1605	1	out	2	\|ali\|phd\|phdHtm\|	203	9	6	14.65	188	MKKIYKALISSLLLSTSINV
327	HI0096	1	out	1	\|ali\|phd\|phdHtm\|	191	8	6	8.61	77	MDLADSQITQGNEIIQSMGL
328	HI0725	1	unk	1	\|ali\|phd\|phdHtm\|	146	0	9	0.00	20	MIWIFFVIALFLVTGLTLYA
329	HI0855	1	out	1	\|ali\|phd\|phdHtm\|	115	4	9	5.00	95	MNLERLNEIEKPLLHIVKHD
330	HI0866	1	out	1	\|ali\|phd\|phdHtm\|	40	0	9	-0.85	31	MVKDNPKRSLILAIGFIIGI
331	HI0894	1	unk	1	\|ali\|phd\|phdHtm\|	382	0	4	0.00	21	MKIILVVFVLIFVGVIGFNM
332	HI0958	1	out	1	\|ali\|phd\|phdHtm\|	392	6	3	6.00	114	MIDCRYYQQNECRSCQWLEI
333	HI1003	1	out	1	\|ali\|phd\|phdHtm\|	60	0	9	0.00	36	MLIEKMHNLTNSKISKFILG
334	HI1128	1	out	1	\|ali\|phd\|phdHtm\|	58	9	9	10.36	41	MVYHNSMCTYLFYNKIGFGL
335	HI1131	1	out	1	\|ali\|phd\|phdHtm\|	107	0	9	0.00	43	MSENNKPRYPLQQILVEDLF
336	HI1326	1	out	1	\|ali\|phd\|phdHtm\|	242	9	4	17.00	222	MMVNDDFQEYVKQLVTKHRD
337	HI1329	1	out	1	\|ali\|phd\|phdHtm\|	103	0	9	0.87	55	MRKSRLSQHKQNKLIELFVA
338	HI1631	1	out	1	\|ali\|phd\|phdHtm\|	190	9	5	32.00	22	MEFSLQYITIFIFVILFLIG

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