Transmembrane helices for haein (Haemophilus influenzae)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Haemophilus influenzae

taxonomy: Bacteria; Proteobacteria; gamma subdivision; Pasteurellaceae; Haemophilus
Haemophilus influenzae is a small, nonmotile, Gram-negative bacterium whose only natural host is human.
The total number of ORF of Haemophilus influenzae used in this study is 1717.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	76	39	35	4.4	2.3	2.0	19.7	11.3	8.3
2	35	21	14	2.0	1.2	0.8	15.3	9.0	6.2
3	17	5	12	1.0	0.3	0.7	13.2	7.8	5.4
4	32	25	7	1.9	1.5	0.4	12.2	7.5	4.7
5	23	9	14	1.3	0.5	0.8	10.4	6.1	4.3
6	40	28	12	2.3	1.6	0.7	9.0	5.5	3.5
7	14	7	7	0.8	0.4	0.4	6.7	3.9	2.8
8	14	10	4	0.8	0.6	0.2	5.9	3.5	2.4
9	13	6	7	0.8	0.3	0.4	5.1	2.9	2.2
10	11	8	3	0.6	0.5	0.2	4.3	2.6	1.7
11	28	13	15	1.6	0.8	0.9	3.7	2.1	1.6
12	22	17	5	1.3	1.0	0.3	2.0	1.3	0.7
13	6	1	5	0.3	0.1	0.3	0.8	0.3	0.4
14	4	3	1	0.2	0.2	0.1	0.4	0.3	0.1
15	1	1	0	0.1	0.1	0.0	0.2	0.1	0.1
16	1	0	1	0.1	0.0	0.1	0.1	0.1	0.1
17	1	1	0	0.1	0.1	0.0	0.1	0.1	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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