Transmembrane helices for ecoli (Escherichia coli)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Escherichia coli

taxonomy: Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Escherichia
The total number of ORF of Escherichia coli used in this study is 4286.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	254	139	111	5.9	3.2	2.6	25.3	15.2	10.0
2	149	94	55	3.5	2.2	1.3	19.4	12.0	7.4
3	83	42	41	1.9	1.0	1.0	15.9	9.8	6.1
4	67	49	18	1.6	1.1	0.4	14.0	8.8	5.1
5	55	22	33	1.3	0.5	0.8	12.4	7.7	4.7
6	90	59	31	2.1	1.4	0.7	11.1	7.2	3.9
7	44	23	21	1.0	0.5	0.5	9.0	5.8	3.2
8	48	29	19	1.1	0.7	0.4	8.0	5.2	2.7
9	41	14	27	1.0	0.3	0.6	6.9	4.6	2.3
10	44	36	8	1.0	0.8	0.2	5.9	4.2	1.7
11	78	37	41	1.8	0.9	1.0	4.9	3.4	1.5
12	93	81	12	2.2	1.9	0.3	3.1	2.5	0.5
13	18	13	5	0.4	0.3	0.1	0.9	0.7	0.2
14	14	10	4	0.3	0.2	0.1	0.5	0.3	0.1
15	3	2	1	0.1	0.0	0.0	0.1	0.1	0.0
16	2	2	0	0.0	0.0	0.0	0.1	0.1	0.0
17	1	1	0	0.0	0.0	0.0	0.0	0.0	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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