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Transmembrane helices for deira (deira)-- Low Reliability Report

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

You can get:

• query the result pages for deira
• display all results sorted by the number of membrane helices predicted
• get explanations of terms used on page
• get explanations for the column names used in the tables
• get all results in one file (size=59 K) by anonymous ftp

Description of deira

• taxonomy: Bacteria; Thermus/Deinococcus group; Deinococcus
• Deinococcus radiodurans R1 is a radiation-resistant bacterium. Its complete genome sequence is composed of two chromosomes (2,648,638 and 412,348 base pairs), a megaplasmid (177,466 base pairs), and a small plasmid (45,704 base pairs), yeilding a total genome of 3,284,156 base pairs. Multiple components distributed on the chromosomes and megaplasmid that contribute to the ability of D. radiodurans to survive under conditions of starvation, oxidative stress, and high amounts of DNA damage were identified. D. radiodurans represents an organism in which all systems for DNA repair, DNA damage export, dessication and starvation recovery, and genetic redundancy are present in one cell.
• The total number of ORF of deira used in this study is 3103.

Attention

• This is our high coverage report. The threshold for transmembrane helices is lowered to get higher coverage, so the reliability decreases.
• This page only covers those proteins that are not detected by our normal threshold (shown in our high reliability report).

Link to full data

• click on ASCII to view the ASCII results (faster loading)
• click on HTML to view the respective pages

nHTM	HTML	ASCII
4--6 HTMs	HTML	ASCII
3 HTMs	HTML	ASCII
2 HTMs	HTML	ASCII
1 HTM	HTML	ASCII

Back to our high reliability report

Last update:

Dec 4, 1999

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