Transmembrane helices for deira (deira)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of deira

taxonomy: Bacteria; Thermus/Deinococcus group; Deinococcus
Deinococcus radiodurans R1 is a radiation-resistant bacterium. Its complete genome sequence is composed of two chromosomes (2,648,638 and 412,348 base pairs), a megaplasmid (177,466 base pairs), and a small plasmid (45,704 base pairs), yeilding a total genome of 3,284,156 base pairs. Multiple components distributed on the chromosomes and megaplasmid that contribute to the ability of D. radiodurans to survive under conditions of starvation, oxidative stress, and high amounts of DNA damage were identified. D. radiodurans represents an organism in which all systems for DNA repair, DNA damage export, dessication and starvation recovery, and genetic redundancy are present in one cell.
The total number of ORF of deira used in this study is 3103.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	85	48	35	2.7	1.5	1.1	17.3	9.8	7.4
2	94	63	31	3.0	2.0	1.0	14.6	8.3	6.3
3	70	28	42	2.3	0.9	1.4	11.6	6.3	5.3
4	53	26	27	1.7	0.8	0.9	9.3	5.3	4.0
5	41	12	29	1.3	0.4	0.9	7.6	4.5	3.1
6	54	40	14	1.7	1.3	0.5	6.3	4.1	2.2
7	25	14	11	0.8	0.5	0.4	4.5	2.8	1.7
8	24	20	4	0.8	0.6	0.1	3.7	2.4	1.4
9	18	12	6	0.6	0.4	0.2	3.0	1.7	1.2
10	26	15	11	0.8	0.5	0.4	2.4	1.4	1.0
11	17	6	11	0.5	0.2	0.4	1.5	0.9	0.7
12	19	14	5	0.6	0.5	0.2	1.0	0.7	0.3
13	6	4	2	0.2	0.1	0.1	0.4	0.2	0.2
14	4	2	2	0.1	0.1	0.1	0.2	0.1	0.1
15	1	0	1	0.0	0.0	0.0	0.1	0.0	0.0
19	1	1	0	0.0	0.0	0.0	0.0	0.0	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Dec 4, 1999 Contact CUBIC WWW administrator:
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