--- -------------------------------------------------------------------------------- --- --- All proteins with at least 10 transmembrane helices in Chlamydia trachomatis --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 1 3328640 13 in 20 490 2 9 -2.34 36,62,110,161,188,233,271,304,330,372,396,441,480 MNKKNTVFSSRLGFILSMMG LGGGVLFLLNRKLYTKFYLN 2 3329145 13 in 3 426 3 0 -3.78 18,55,100,124,160,197,227,283,305,329,368,393,419 MWLLLVCVVVGGFYTAWNIG TVPAGAALSIVFFLLLRALF 3 3328611 13 out 5 471 4 0 4.75 28,57,101,133,155,197,235,298,340,380,409,435,462 MNKHKRFLSLVLLTFILLGI VNLTIWLGLGSWWWYCLGLI 4 3328798 12 in 7 483 6 1 -6.91 33,63,116,154,180,223,259,309,357,382,432,477 MLLKKRSPTSILGTLALTGI TIVALAALLAIFLFSANKIH 5 3328624 12 in 2 466 9 1 -10.66 30,57,108,142,171,210,252,297,357,381,419,457 MHHRKSSTSLGTFTVGMLSL AFVINCCIPFGMYYSHKKLI 6 3328643 12 in 1 928 6 0 -6.24 48,83,112,143,180,202,300,327,374,415,692,812 MLLFYKGSGSLRALRFLLSL LQSFAKKQKTSILSREYITS 7 3329071 12 in 1 536 2 0 -2.98 60,82,112,140,204,246,328,373,402,424,471,510 MRKDDEGSLVRSLFNLLSGT EDLMNLISFQYWKGHQSILR 8 3329193 12 out 5 455 5 0 5.33 32,83,110,165,201,228,250,272,321,366,397,426 MLQFLKQINHFLTSFCVFPL TRYEVALLRKEAQAQSDPLR 9 3328994 11 in 5 411 9 2 -11.78 37,69,104,145,177,220,270,324,358,384,411 MHKKTQSHSHKGLSIWSIGG PHAKTLFYLVFALTILYKLS 10 3329286 11 in 4 415 9 1 -10.28 41,69,119,161,185,216,254,308,355,377,408 MESRSRKSMRLSKKGILMIN LVMSGLVLLNLVLIAQKFLG 11 3329287 11 in 4 397 9 0 -10.17 23,52,104,144,170,201,239,293,330,354,392 MCMRNKCVGGILIVAGTVIG TVLLILTGYTVLNLATLYYT 12 3328459 11 in 3 528 7 0 -7.12 45,83,113,161,205,242,300,345,374,400,484 MTQTAEKPFGKLRSFLWPIH AAEKEASSAAKESAPAIEGV 13 3328932 11 in 2 540 5 0 -5.53 44,82,112,168,205,237,305,352,387,409,493 MSSEVKSFSKFRGYFFPIYR EEREASSLVDAESREEPVTT 14 3329329 11 in 2 567 5 1 -5.49 57,79,101,123,148,202,225,273,352,374,414 MVKVSLSFKHLVPKLVTCLK NIKGALLFAKALIKLESKSS 15 3329330 11 in 1 421 4 1 -4.20 25,49,86,123,168,193,249,303,341,380,412 MLKFQLCLLFLFGYLTIVFE ASYFGGLAVYFLMENCVSLF 16 3328983 11 out 7 456 1 1 1.75 50,87,127,182,204,280,320,350,379,412,442 MNLWTKIFQPPCHIKEISDP ALILFLPTWNASEQSLRKHS 17 3328880 11 out 6 1400 3 0 3.26 28,928,950,972,1025,1104,1250,1275,1302,1358,1381 MKRNFKRNLSIIILVFALAL LYIAPPLLLFMVRKEEQNSL 18 3328837 11 out 2 453 9 3 12.98 32,93,115,172,203,231,260,326,369,394,423 MSAFLSFLTAFDDFIWSYIA ELIFPKKEAETLEVSESTLS 19 3328639 11 out 1 415 2 0 2.29 43,65,104,126,160,203,241,268,321,347,375 MRSPLKLLFSPEKSNMMLGL SVINKKFSETEDLPPCSYTN 20 3329272 11 out 1 450 3 2 3.10 30,81,114,163,198,238,290,329,364,388,438 MILPHYSSGLRIGSAILFFS ISLSIFWLFRAVPPFMFCLF 21 3328947 10 in 33 457 9 2 -12.65 35,90,137,179,211,250,303,343,403,431 MATLRQVFSISELRQKIFFT AFLLVRRYDGVLKKDRPKGR 22 3329222 10 in 17 385 9 0 -9.98 24,62,89,124,156,186,208,285,321,350 MKWFLISCLLGIFSLGLIMV GSGGNRRAHYPCSSSKRDFY 23 3328464 10 in 4 318 8 3 -8.90 27,58,94,116,144,189,218,243,272,306 MVASISPYYGVSFLEFFLVF VVMLVFVCSKRAIMLRQKLD 24 3328425 10 in 1 341 1 1 -1.65 39,64,98,120,150,183,224,260,288,320 MMSSPHPMSSSRNTPLGVFY KKASEQETPSETLITTESDA 25 3329022 10 in 1 327 9 0 -10.43 38,66,96,131,161,192,226,262,289,311 MVAVKALLFACTLQTCVFKP VLGCRLIYHEEFRQGYVLTS 26 3328828 10 out 22 412 3 2 3.54 21,53,92,154,193,235,258,314,338,364 MKLWMKIFIGLIIGVVSGLI DGEGEFSSSNEGEEDILPQN 27 3328582 10 out 1 404 4 2 4.67 42,75,114,156,186,227,249,323,354,388 MEKDFLENVYRHFRYRFFKL STLLSIIVSGIAFIILSIGR