Transmembrane helices for chltr (Chlamydia trachomatis)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Chlamydia trachomatis

taxonomy: Bacteria; Chlamydiales; Chlamydiaceae; Chlamydophila
Chlamydia are eubacterial pathogens of humans, many other mammals and birds and are considered to be the most ubiquitous pathogens in the animal kingdom. There are no known free-living chlamydiae, thus they are obligate pathogens. Natural chlamydial infections in humans are recognized as the leading cause of many important sexually transmitted diseases worldwide. C. trachomatis also causes trachoma which is the leading preventable cause of blindness in the world.
The total number of ORF of Chlamydia trachomatis used in this study is 894.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	30	14	16	3.4	1.6	1.8	22.1	13.0	9.2
2	51	37	14	5.7	4.1	1.6	18.8	11.4	7.4
3	23	11	12	2.6	1.2	1.3	13.1	7.3	5.8
4	19	15	4	2.1	1.7	0.4	10.5	6.0	4.5
5	14	6	8	1.6	0.7	0.9	8.4	4.4	4.0
6	14	5	9	1.6	0.6	1.0	6.8	3.7	3.1
7	5	3	2	0.6	0.3	0.2	5.3	3.1	2.1
8	10	5	5	1.1	0.6	0.6	4.7	2.8	1.9
9	5	2	3	0.6	0.2	0.3	3.6	2.2	1.3
10	7	5	2	0.8	0.6	0.2	3.0	2.0	1.0
11	12	7	5	1.3	0.8	0.6	2.2	1.5	0.8
12	5	4	1	0.6	0.4	0.1	0.9	0.7	0.2
13	3	2	1	0.3	0.2	0.1	0.3	0.2	0.1

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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