--- -------------------------------------------------------------------------------- --- --- All proteins with at least 7 transmembrane helices in Chlamydia pneumoniae --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 27 aad18707 9 in 6 308 9 3 -9.49 42,64,93,123,153,182,228,253,303 MLNSNKFKSKTGAYGDLFQR LLSTPIAYLFLLITQSKEFI 28 aad18414 9 in 1 297 1 3 -1.65 31,64,115,137,165,187,237,259,293 MRLNYFLNLVNFKYSIFSIL ANIAIALSFLVSMTLFWSLS 29 aad18736 9 out 12 579 5 0 5.46 42,93,118,335,397,442,464,512,562 MQKHPSFYQRFLSAYYKNLL IAIALIGDGVRDALDPRLQD 30 aad18255 9 out 6 448 9 2 14.36 37,72,113,145,205,238,341,374,426 MDALILSRIQFGLFITFHYL LCKKIKHGPEEENDLTEFEV 31 aad19038 9 out 6 349 0 0 0.34 34,104,147,187,219,245,285,307,345 MIPLIPMFLKQSLFFSLALT MRFWIFSFVCAGLGIAAVLW 32 aad18280 9 out 1 338 1 1 1.64 39,65,110,152,181,223,262,290,321 MFPSANQESRTRNVPLGIFH VLFGRKVQKSLENSQVSSSN 33 aad18490 9 out 1 324 8 4 8.58 61,86,112,145,191,222,251,275,303 MALGPSPYYGVSFFQFFSVF SYFRGYFSKNFEKISEKSSQ 34 aad18382 8 in 8 411 9 2 -11.14 35,73,109,188,229,323,354,398 MDKETLENIYRHFRYRFLKL VTGLILIILSIGKRRRTKRK 35 aad18256 8 in 4 344 9 3 -9.14 28,92,140,180,222,252,286,328 MELSLTSLLPLAWYVILGVA ITYTCYIYRVFRGKTNFPSI 36 aad19120 8 in 4 265 8 2 -8.58 36,66,105,130,170,202,224,253 MAGLDLEARGKRRVVTPNAI VSWLYTLVGFPIFSIIYRKK 37 aad18571 8 in 3 503 7 0 -7.08 72,179,211,380,406,438,468,490 MLKKFINSLWKLCQQDKYQR GNVFAPLIDYFAVRKYRKRG 38 aad18945 8 in 3 303 1 0 -1.97 18,57,82,136,170,199,237,268 MSLFLVFLTAFIWSSSFALS FMVAGCRLIYHEEFRQGYIV 39 aad18341 8 in 1 430 2 0 -2.19 66,101,125,174,211,248,277,316 MFRKLFPFSKKKTGQKQRLR FNQASKNKENLTLSEIARRI 40 aad18614 8 in 1 589 9 0 -16.24 82,104,240,262,373,395,501,523 MSTSPISNDPRYLSLSNATE LFDLDGPVDFIDVDVDIDGA 41 aad19132 8 in 1 366 4 0 -4.42 31,61,83,121,270,299,332,360 MLIWKRHLLTRFWFALTSLL VMAFPLIVLFLLTNYAYAKL 42 aad18683 8 out 9 293 2 5 2.00 40,62,87,120,164,207,236,265 MLSSLIRDSFPLLILLPTFL VKKRYNPSTPSPVSPEINTN 43 aad18352 7 in 18 314 2 0 -2.68 27,119,157,190,247,269,295 MFSYIKNRILFNLLSLWIVL LIQSIIDPQIRYAHGKEKKR 44 aad18924 7 in 8 703 2 1 -2.21 312,358,393,467,516,538,573 MIAPFFSFPALSGSFSSIQA VVLPEKITQNLLEDVVSRFV 45 aad18507 7 in 4 582 6 1 -6.84 28,50,76,121,207,243,294 MSGKKDGVRGMIFVPLSILV ELPKEIPISFLGIVSDEVLV 46 aad18960 7 in 2 289 0 5 -0.38 47,71,114,172,212,241,270 MGISLPELFSNLGSAYLDYI FTLAWFKEVPIMLLGSNPQV 47 aad19108 7 in 2 238 2 5 -2.62 51,77,104,127,157,181,227 MGLYDRDYIQDSRVQGTFAS CNVIMVFWYLLQIFSSSGNR 48 aad18491 7 in 1 448 0 1 -0.55 34,84,118,164,209,256,293 MLSCVFSDTIFLSSFLAVTL ILNDPCYDPHRQIIPNKKKE 49 aad18460 7 out 7 288 9 3 19.00 39,86,124,157,216,239,275 MAVIYWDRSKIVWSFEPWSL LFGVALLIICSLKARRHRSH 50 aad18412 7 out 4 296 0 3 0.21 38,60,82,104,142,187,209 MSHGPRPTKFSFPLYFSKTL EDPSAFIAIENLHEVINGRR 51 aad19101 7 out 4 604 9 0 14.67 29,62,84,111,152,188,210 MIPSGLVYLLYPLGFLASLF TTGQIASEEFLKRIFDTLPA 52 aad18201 7 out 1 705 0 0 0.11 44,278,322,354,385,413,449 MKELRHESYNRALHKLSHQW YPEISYQISMDSCPKPSIGG 53 aad18370 7 out 1 228 9 3 11.05 29,52,74,109,155,190,215 MKGFLSVNELIFGFQTFSVV VITLAIPTLTVTKAVLDRRS 54 aad18544 7 out 1 257 9 0 11.61 23,53,84,125,171,221,256 MSKFILLLSLGVAALASKNF LSPIALHGLFNLTSLLFLGI 55 aad18875 7 out 1 565 7 1 7.57 66,111,192,245,321,375,403 MTVSVKKKSFRALVTTHFLT IQLVQKEGKKRVIYTLVFPH