--- -------------------------------------------------------------------------------- --- --- All proteins with at least 4 transmembrane helices in Chlamydia pneumoniae --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 56 aad18962 6 in 20 306 3 0 -3.42 25,67,114,151,268,293 MRSIFRFSLCFFTLSVSCCF LLIVMVDGWTLLLQGLMISF 57 aad18353 6 in 16 284 9 1 -9.48 40,104,148,170,220,267 MENLSSAPSRSIWKSIIQNK ISFNLIGEGAKTLCLEEGSH 58 aad18737 6 in 16 493 9 2 -13.39 28,278,314,372,432,478 MLKYILKRLVLIPLTLFAIV LLGDICYVLLDPRVQLEGRR 59 aad19149 6 in 3 591 9 0 -15.23 24,79,123,145,189,234 MKKKFIFYFVIVFSLLFLWE EVAKFSLNDLYNPSLPEEQS 60 aad19182 6 in 3 230 9 3 -10.61 34,58,91,128,178,203 MNTSHRKTLVFSYLSSTFTL RKFLGMPSTKIANTVPLINQ 61 aad18792 6 in 2 541 9 0 -19.17 25,72,97,182,204,529 MLRIFCFVISWCLIAFAQPD AVSYLGGGFLGYRLLAKKEI 62 aad19166 6 in 2 279 7 4 -7.43 51,80,127,167,219,261 MLWGVSMRQSFDELSQNAFK FFNFSFSFYLAKQEEEKALV 63 aad18574 6 in 1 256 2 3 -2.78 36,63,109,140,171,210 MWLGAYTWLNVFGILLQAAF KESSSKHQPSISKARTQRRS 64 aad19133 6 in 1 357 6 3 -6.76 35,72,113,295,321,344 MPILWKVLIFRYLKTAAFCT PQLVSWVVFAARAYRESRGY 65 aad19006 6 out 32 658 2 0 2.06 60,83,125,289,321,642 MFSRLFFTSFSAEVVNTFFE VILHEGSTVIVGLNALRLLK 66 aad18472 6 out 18 710 2 0 2.59 55,94,139,227,267,321 MNKLLNFVSRTLGGDTALNM ISYQEILPEIRIQPLGRIQI 67 aad19147 6 out 9 202 7 6 7.01 24,65,87,125,158,191 MLILLNLSLLFYVLFDSPGS MSVNLMLKGISIAFNIGFYI 68 aad18244 6 out 1 660 8 1 8.97 335,465,493,545,576,611 MRLNIHKYLFIGRNKADFFS KIVCSEDAEASGIHLDNNSI 69 aad18435 6 out 1 470 3 0 3.88 79,315,344,393,432,465 MDSRTSHLDDELSFKLEKAF DIMSMIIFFLIAGGINFLFF 70 aad18393 5 in 24 388 1 0 -1.29 92,132,192,215,244 MVYFMVFSPSSESVVKANSV APTMPSAPPPFPPPAYDTIY 71 aad18380 5 in 2 136 8 1 -8.03 30,53,85,114,136 MINFIRSYALYFAWAISCAG ASVVAFGAIVCLLVLTKKYR 72 aad18926 5 in 2 297 8 4 -8.26 50,90,142,246,289 MSRHEICPEVSHKKGKYYST LAMIVVTFMGVSAVWNLYSV 73 aad18165 5 in 1 964 7 0 -7.38 29,58,139,168,243 MRKLRILAIVLIALSIILIA AMQFNEEALLQEELSIQAPS 74 aad18437 5 in 1 382 9 1 -9.27 83,109,185,214,268 MSCFNLTSTNESLRPISPKA RYPHISVIPDSGNDSAKNFI 75 aad18459 5 in 1 795 2 1 -2.10 578,600,664,707,766 MNKRTLLFVSLIGIAFVGCQ NKILDSKHLKNEVVLNNKKH 76 aad18345 5 out 30 217 8 5 8.66 36,75,103,166,203 MDHWLAIARLLLRGCGYTLC LMTTSFSCISRLSEKRRSYD 77 aad19085 5 out 7 206 9 6 9.17 27,50,103,154,180 MGLPNYITFSRLFITPIFMI KNFLSQRAKTKDSEKNHESK 78 aad18573 5 out 3 213 8 5 8.34 47,90,114,153,201 MTSKKSYKSYFFDPLWSNNQ FFLLGIMIWLVNIRDSKKRK 79 aad18394 5 out 2 384 7 0 7.50 140,195,224,260,297 MSAMISLSSSHEASIASNTQ YSTIDSSNSPFPSSSPPPYY 80 aad18428 5 out 2 221 8 6 8.51 37,78,107,162,204 MQSDLIQILLKETVNTLYMV ESVRILGDFWGRRVLKYRGI 81 aad18416 5 out 1 263 3 3 3.61 66,95,181,203,231 MSIMSLNKTNALLNQPEPAV EINTYLTEECRQQKREKALL 82 aad18992 5 out 1 344 2 2 2.44 32,75,150,230,263 MNSKMLKHLRLATLSFSMFF YSVEGRWGYQRAINITSGLQ 83 aad18557 4 in 219 659 0 0 -0.26 143,230,329,351 MKLLLKAVLRHKNHLVILGC NRVFVPDHKLVANPTDMAIT 84 aad18471 4 in 13 360 9 3 -14.10 50,102,162,202 MGEKTEKATPKRLRDARKKG YITSLNAQNPNNKNTNQPDH 85 aad18675 4 in 10 168 9 3 -21.01 25,88,118,155 MATRFRSTLLVITLFVLIDW LGTLLLVYKFYFPTKQTEKK 86 aad18955 4 in 7 391 9 2 -12.15 181,227,271,381 MPRYRYTYLDPKERRKRGYL GLIGVIMLAILIPLTSNIQT 87 aad18488 4 in 4 621 3 1 -3.15 20,123,562,613 MTIIYFILAALALGILVLIH TFLLIIFFIFLTFQDLFRFF 88 aad18402 4 in 3 503 9 2 -9.30 42,381,433,486 MKFEFSVALKYLIPGRGRLY SGALPARKVAKMHVSEILKA 89 aad18519 4 in 3 165 9 1 -9.51 69,97,132,154 MKLGASTNHKVHEPVKPKKA LALLTSLFLTLRRSSSQRKT 90 aad19007 4 in 3 248 4 1 -4.01 65,87,204,233 MTQDPHDHFKSRTPEDHIKH VWVLGIFITSASIISSLMKL 91 aad18218 4 in 1 576 9 1 -18.35 52,86,271,293 MTDFPTHFKGPKLNPIKVNP RILGIIVEGDSDSRTEEEPQ 92 aad18222 4 in 1 617 7 1 -7.13 457,487,541,605 MTTPPPSRSSSPPPYDWIEL ILFANLIFMVYSVRRYHRSR 93 aad18461 4 in 1 151 0 0 -0.36 35,57,112,135 MARNIKYFLILFPGILWISA KTAIAYFSKLQNALMENPEG 94 aad18483 4 in 1 171 4 9 -4.86 39,79,119,159 MSVHITPRKCFILCILSMFT PCAINSGIHKMISFFRRLVC 95 aad18525 4 in 1 591 4 0 -4.50 392,426,456,579 MTAPTESRSSPPTLLEETEP LFVNLWFFVKSVLRHSRRRR 96 aad18587 4 in 1 417 9 2 -17.74 83,105,140,164 MSQPPINPLGQPQVPAAASP PSNPFSDGYDEREKRKHRKN 97 aad18646 4 in 1 223 9 3 -11.84 34,56,85,107 MKKYFITGLVILLPLAITIA STPMACPSSPLPDELHQDQG 98 aad18811 4 in 1 436 5 0 -5.79 25,76,149,419 MKRPFFTYLCIIFYGSCASL LMYFRIRKHRKYKNLKHYSK 99 aad18891 4 in 1 282 5 1 -5.78 59,191,242,271 MATAHLGRQALLHLRSWTPA MAILGLISCVINFVKDYAKI 100 aad18967 4 in 1 172 6 1 -6.65 18,114,136,162 MIALLYNITLVLGLIFIHKK IIFTLLTLPFWLISCLKSSA 101 aad19140 4 in 1 235 8 1 -8.12 48,130,191,216 MRVIFPDKHNNFPNLSKLLK LAILFCKKEKIPNPYTTSLR 102 aad18245 4 out 23 141 9 3 9.26 24,73,98,138 MIDMSVVGPALVLGLAMIGS AAIGIVESFSLFAVVFALLL 103 aad18947 4 out 6 493 5 0 5.11 276,300,345,489 MSISSSSGPDNQKNIMSQVL ILKAYAAISGAIAGAHKTNN 104 aad18225 4 out 1 335 5 0 5.23 67,103,129,193 MSTPLSSGGISPSDQYVPQE TLSQTLQQIKKEPDRIIESN 105 aad18537 4 out 1 411 9 4 11.79 27,84,106,139 MIPTMLMFFIICFTLCSGFI FQVLDAAPNRIRRVYIRKLY 106 aad18538 4 out 1 404 8 0 8.23 24,73,111,145 MTNSALFWIGVNIICIVLQG LEVKEMSLSGIKTVSIKNLL