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Transmembrane helices for chlpn (Chlamydia pneumoniae)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

235 aad18347 1 in 15 |ali|phd|phdHtm| 344 3 3 -3.20 99 MLTLGLESSCDETACAIVNE

236 aad18623 1 in 11 |ali|phd|phdHtm| 1043 6 1 -6.20 61 MIKKRAIFERMFPIPPPHCP

237 aad18851 1 in 3 |ali|phd|phdHtm| 845 9 1 -12.00 565 MAVRLIVDEGPLSGVIFVLE

238 aad18956 1 in 3 |ali|phd|phdHtm| 123 9 9 -18.57 32 MKRQKRKQSITLIEMMVVIT

239 aad18246 1 in 2 |ali|phd|phdHtm| 169 9 8 -13.04 41 MQRLGLSNLFHCLLLFLRYY

240 aad18957 1 in 2 |ali|phd|phdHtm| 148 9 9 -9.79 37 MSNIMGSRRKLKRSFLLIEV

241 aad18966 1 in 2 |ali|phd|phdHtm| 185 1 9 -2.00 175 MPTLAKSFYINIRDSRFYSW

242 aad18203 1 in 1 |ali|phd|phdHtm| 105 7 9 -7.38 71 MRYAKHQTNWNDENVKANLG

243 aad18216 1 in 1 |ali|phd|phdHtm| 52 9 9 -9.68 49 MYANCKHNCLCLYDFSRHRS

244 aad18217 1 in 1 |ali|phd|phdHtm| 77 9 9 -13.92 65 MTKIQCSAQYYRSRPAERAQ

245 aad18228 1 in 1 |ali|phd|phdHtm| 83 9 9 -18.11 67 MKQQHNRKALSRKIGTVKKQ

246 aad18312 1 in 1 |ali|phd|phdHtm| 102 4 9 -4.17 42 MTPSGFSLATEEKVQVSTAE

247 aad18314 1 in 1 |ali|phd|phdHtm| 275 4 5 -4.00 146 MITGVVLEKHEQRTMFSLTL

248 aad18598 1 in 1 |ali|phd|phdHtm| 402 7 3 -7.38 50 MTHCLHGWFSVVRHHFVQAF

249 aad18599 1 in 1 |ali|phd|phdHtm| 582 1 2 -1.38 51 MASCLSAWFSIVREHFYRAF

250 aad18639 1 in 1 |ali|phd|phdHtm| 385 9 3 -12.00 300 MSSVNQSSGTPNPEEVTSPE

251 aad18806 1 in 1 |ali|phd|phdHtm| 294 8 3 -8.00 269 MKKLILYFAAFVASLFCGVF

252 aad18815 1 in 1 |ali|phd|phdHtm| 389 3 3 -4.00 158 MGTPISGNDGDRNTISDPLE

253 aad18922 1 in 1 |ali|phd|phdHtm| 135 2 9 -2.00 39 MKYRFTEEIEEEPLVNLTPL

254 aad19035 1 in 1 |ali|phd|phdHtm| 295 8 4 -8.00 169 MQEKPRHVHRIIHISDVHFH

255 aad19100 1 in 1 |ali|phd|phdHtm| 486 2 4 -2.00 101 MHMSNPISLFSPAELIAKYN

256 aad19122 1 out 24 |ali|phd|phdHtm| 346 2 4 2.68 204 MEADILDGKLKRVEVSKKGL

257 aad19021 1 out 14 |ali|phd|phdHtm| 431 9 3 17.00 30 MTWLSGLYFICIASLIFCAI

258 aad18236 1 out 12 |ali|phd|phdHtm| 327 1 4 1.96 176 MSNQFDQLKKLSTIVCDSGD

259 aad18943 1 out 10 |ali|phd|phdHtm| 255 2 4 2.32 149 MKTIAVNSFKGGTAKTSTTL

260 aad18562 1 out 9 |ali|phd|phdHtm| 483 5 2 5.16 311 MDLKELLHGVQAKIYGKVRP

261 aad18965 1 out 7 |ali|phd|phdHtm| 335 6 4 6.00 257 MVRRSISFCLFFLMTLLCCT

262 aad19022 1 out 2 |ali|phd|phdHtm| 117 9 9 27.27 50 MLSRIVTCFLFLLSSLPLFA

263 aad18168 1 out 1 |ali|phd|phdHtm| 297 9 6 14.00 40 MLLLISGALFLTLGIPGLSA

264 aad18181 1 out 1 |ali|phd|phdHtm| 261 9 7 10.00 100 MFLQFFHPIVFSDQSLSFLP

265 aad18279 1 out 1 |ali|phd|phdHtm| 759 9 2 16.00 42 MVFSYYCMGLFFFSGAISSC

266 aad18315 1 out 1 |ali|phd|phdHtm| 342 1 5 1.09 80 MKLYSISSDVDTPWIFQLMS

267 aad18373 1 out 1 |ali|phd|phdHtm| 181 9 7 16.00 113 MSKESIRSYSEISTPTPIFR

268 aad18376 1 out 1 |ali|phd|phdHtm| 126 8 9 8.29 119 MLIGRYSSDDQFTEATKNTP

269 aad18377 1 out 1 |ali|phd|phdHtm| 80 5 9 5.69 59 MKPNSIIFLENTKHYPDIFR

270 aad18555 1 out 1 |ali|phd|phdHtm| 259 0 5 0.00 189 MILTAAFSPCPNDIFLFRSF

271 aad18603 1 out 1 |ali|phd|phdHtm| 265 5 6 5.55 54 MACPSISSWFTVVRQHFVNA

272 aad18604 1 out 1 |ali|phd|phdHtm| 672 4 2 4.57 53 MACYISIWISTVKQHFIRAF

273 aad18677 1 out 1 |ali|phd|phdHtm| 119 9 9 11.83 31 MDNYLLGSLIFCCVLLSIGM

274 aad18827 1 out 1 |ali|phd|phdHtm| 252 4 5 4.00 172 MLIVLAFRQVFFSHSRSQLD

275 aad18861 1 out 1 |ali|phd|phdHtm| 162 6 7 6.00 28 MTKFLYCGLFYSLGLLVLAF

276 aad18964 1 out 1 |ali|phd|phdHtm| 277 9 5 10.00 153 MTANTFGTLDILMKHSKEDD

277 aad18978 1 unk 1 |ali|phd|phdHtm| 441 0 3 0.00 21 MWLVILWALAASLAIALVAK

278 aad19017 1 out 1 |ali|phd|phdHtm| 265 6 4 6.29 251 MQGFFPLASGSKGNSAYLGT

279 aad19051 1 out 1 |ali|phd|phdHtm| 62 9 9 24.80 59 MRRNCIYAFDLDGTLLKGNS

280 aad19156 1 out 1 |ali|phd|phdHtm| 497 0 2 0.00 392 MTVSYQSISTPPPEGEFDIF

281 aad19192 1 out 1 |ali|phd|phdHtm| 276 9 7 14.00 36 MLFLISGALFLTLGISGLSA

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
235	aad18347	1	in	15	\|ali\|phd\|phdHtm\|	344	3	3	-3.20	99	MLTLGLESSCDETACAIVNE
236	aad18623	1	in	11	\|ali\|phd\|phdHtm\|	1043	6	1	-6.20	61	MIKKRAIFERMFPIPPPHCP
237	aad18851	1	in	3	\|ali\|phd\|phdHtm\|	845	9	1	-12.00	565	MAVRLIVDEGPLSGVIFVLE
238	aad18956	1	in	3	\|ali\|phd\|phdHtm\|	123	9	9	-18.57	32	MKRQKRKQSITLIEMMVVIT
239	aad18246	1	in	2	\|ali\|phd\|phdHtm\|	169	9	8	-13.04	41	MQRLGLSNLFHCLLLFLRYY
240	aad18957	1	in	2	\|ali\|phd\|phdHtm\|	148	9	9	-9.79	37	MSNIMGSRRKLKRSFLLIEV
241	aad18966	1	in	2	\|ali\|phd\|phdHtm\|	185	1	9	-2.00	175	MPTLAKSFYINIRDSRFYSW
242	aad18203	1	in	1	\|ali\|phd\|phdHtm\|	105	7	9	-7.38	71	MRYAKHQTNWNDENVKANLG
243	aad18216	1	in	1	\|ali\|phd\|phdHtm\|	52	9	9	-9.68	49	MYANCKHNCLCLYDFSRHRS
244	aad18217	1	in	1	\|ali\|phd\|phdHtm\|	77	9	9	-13.92	65	MTKIQCSAQYYRSRPAERAQ
245	aad18228	1	in	1	\|ali\|phd\|phdHtm\|	83	9	9	-18.11	67	MKQQHNRKALSRKIGTVKKQ
246	aad18312	1	in	1	\|ali\|phd\|phdHtm\|	102	4	9	-4.17	42	MTPSGFSLATEEKVQVSTAE
247	aad18314	1	in	1	\|ali\|phd\|phdHtm\|	275	4	5	-4.00	146	MITGVVLEKHEQRTMFSLTL
248	aad18598	1	in	1	\|ali\|phd\|phdHtm\|	402	7	3	-7.38	50	MTHCLHGWFSVVRHHFVQAF
249	aad18599	1	in	1	\|ali\|phd\|phdHtm\|	582	1	2	-1.38	51	MASCLSAWFSIVREHFYRAF
250	aad18639	1	in	1	\|ali\|phd\|phdHtm\|	385	9	3	-12.00	300	MSSVNQSSGTPNPEEVTSPE
251	aad18806	1	in	1	\|ali\|phd\|phdHtm\|	294	8	3	-8.00	269	MKKLILYFAAFVASLFCGVF
252	aad18815	1	in	1	\|ali\|phd\|phdHtm\|	389	3	3	-4.00	158	MGTPISGNDGDRNTISDPLE
253	aad18922	1	in	1	\|ali\|phd\|phdHtm\|	135	2	9	-2.00	39	MKYRFTEEIEEEPLVNLTPL
254	aad19035	1	in	1	\|ali\|phd\|phdHtm\|	295	8	4	-8.00	169	MQEKPRHVHRIIHISDVHFH
255	aad19100	1	in	1	\|ali\|phd\|phdHtm\|	486	2	4	-2.00	101	MHMSNPISLFSPAELIAKYN
256	aad19122	1	out	24	\|ali\|phd\|phdHtm\|	346	2	4	2.68	204	MEADILDGKLKRVEVSKKGL
257	aad19021	1	out	14	\|ali\|phd\|phdHtm\|	431	9	3	17.00	30	MTWLSGLYFICIASLIFCAI
258	aad18236	1	out	12	\|ali\|phd\|phdHtm\|	327	1	4	1.96	176	MSNQFDQLKKLSTIVCDSGD
259	aad18943	1	out	10	\|ali\|phd\|phdHtm\|	255	2	4	2.32	149	MKTIAVNSFKGGTAKTSTTL
260	aad18562	1	out	9	\|ali\|phd\|phdHtm\|	483	5	2	5.16	311	MDLKELLHGVQAKIYGKVRP
261	aad18965	1	out	7	\|ali\|phd\|phdHtm\|	335	6	4	6.00	257	MVRRSISFCLFFLMTLLCCT
262	aad19022	1	out	2	\|ali\|phd\|phdHtm\|	117	9	9	27.27	50	MLSRIVTCFLFLLSSLPLFA
263	aad18168	1	out	1	\|ali\|phd\|phdHtm\|	297	9	6	14.00	40	MLLLISGALFLTLGIPGLSA
264	aad18181	1	out	1	\|ali\|phd\|phdHtm\|	261	9	7	10.00	100	MFLQFFHPIVFSDQSLSFLP
265	aad18279	1	out	1	\|ali\|phd\|phdHtm\|	759	9	2	16.00	42	MVFSYYCMGLFFFSGAISSC
266	aad18315	1	out	1	\|ali\|phd\|phdHtm\|	342	1	5	1.09	80	MKLYSISSDVDTPWIFQLMS
267	aad18373	1	out	1	\|ali\|phd\|phdHtm\|	181	9	7	16.00	113	MSKESIRSYSEISTPTPIFR
268	aad18376	1	out	1	\|ali\|phd\|phdHtm\|	126	8	9	8.29	119	MLIGRYSSDDQFTEATKNTP
269	aad18377	1	out	1	\|ali\|phd\|phdHtm\|	80	5	9	5.69	59	MKPNSIIFLENTKHYPDIFR
270	aad18555	1	out	1	\|ali\|phd\|phdHtm\|	259	0	5	0.00	189	MILTAAFSPCPNDIFLFRSF
271	aad18603	1	out	1	\|ali\|phd\|phdHtm\|	265	5	6	5.55	54	MACPSISSWFTVVRQHFVNA
272	aad18604	1	out	1	\|ali\|phd\|phdHtm\|	672	4	2	4.57	53	MACYISIWISTVKQHFIRAF
273	aad18677	1	out	1	\|ali\|phd\|phdHtm\|	119	9	9	11.83	31	MDNYLLGSLIFCCVLLSIGM
274	aad18827	1	out	1	\|ali\|phd\|phdHtm\|	252	4	5	4.00	172	MLIVLAFRQVFFSHSRSQLD
275	aad18861	1	out	1	\|ali\|phd\|phdHtm\|	162	6	7	6.00	28	MTKFLYCGLFYSLGLLVLAF
276	aad18964	1	out	1	\|ali\|phd\|phdHtm\|	277	9	5	10.00	153	MTANTFGTLDILMKHSKEDD
277	aad18978	1	unk	1	\|ali\|phd\|phdHtm\|	441	0	3	0.00	21	MWLVILWALAASLAIALVAK
278	aad19017	1	out	1	\|ali\|phd\|phdHtm\|	265	6	4	6.29	251	MQGFFPLASGSKGNSAYLGT
279	aad19051	1	out	1	\|ali\|phd\|phdHtm\|	62	9	9	24.80	59	MRRNCIYAFDLDGTLLKGNS
280	aad19156	1	out	1	\|ali\|phd\|phdHtm\|	497	0	2	0.00	392	MTVSYQSISTPPPEGEFDIF
281	aad19192	1	out	1	\|ali\|phd\|phdHtm\|	276	9	7	14.00	36	MLFLISGALFLTLGISGLSA

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