--- -------------------------------------------------------------------------------- --- --- All proteins with at least 10 transmembrane helices in Campylobacter jejuni --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 1 cj0204 17 in 2 665 0 0 -0.40 35,57,94,121,180,208,231,281,332,366,397,427,471,533,557,619,660 MMYKKQNLPELTLRGLILGS ALIFFVGVVLYFIKRIVKKD 2 cj0938c 15 in 9 1170 6 0 -6.06 29,67,107,129,160,200,258,292,333,355,398,424,474,711,869 MQKKSFLKIYGLIPFLLIAF LLGSGKVDLKKVKELAKNLA 3 cj0917c 15 out 7 713 7 0 7.47 37,62,139,193,220,247,283,311,352,398,491,540,575,602,688 LKIFYFLRRNMTQLSTKILW GKIKIPLKETKYIKIDEFQK 4 cj0555 15 out 1 430 9 0 9.30 20,43,68,115,144,166,197,219,242,275,306,343,372,394,429 MIMVFLIISSIIVAIILGYI KAVPIGFIAAILATIIMSFI 5 cj1568c 14 out 78 596 0 0 0.93 51,92,128,150,185,219,257,286,337,382,418,462,499,595 MQNLALISLFSPFVAFLFAS NLMLRFLVAAFVILLILVWM 6 cj1566c 14 out 11 462 6 0 6.26 34,62,97,133,155,181,222,258,286,318,342,389,422,462 MLNNFLNLELLNISLSYPFL IQNFILAFCVCVSTFVILLM 7 cj0801 14 out 3 483 9 0 11.29 24,48,70,104,144,170,199,259,289,330,368,410,432,463 MKSLVFKNFIINALGILFSR LIKPYILSFFIGIFTSFKGV 8 cj1013c 13 in 15 1081 0 0 -0.48 33,66,95,489,524,795,828,859,926,974,1007,1036,1072 MKNIIKSIGDLRVSVVLFLL FALMVVLAFFARRKRNFVGK 9 cj0076c 13 in 5 560 1 0 -1.21 37,62,93,154,180,218,244,270,318,393,428,462,550 LEQILTWQQIYDPFSNIWLS GIWTCIIAFFLQGIIPEVIV 10 cj1283 13 in 3 447 2 0 -2.03 32,56,92,148,170,206,246,279,303,325,366,389,425 LKQFGLDRRTFKILLAGYII LSVFKQDKAIHLKFPEGKVN 11 cj1567c 13 out 64 495 0 1 0.13 20,42,87,124,169,217,248,279,302,328,376,410,461 MLNYLIFFPLISAFVVLLLN IRAVEQNTLDFLSKIGEANV 12 cj1502c 13 out 5 495 8 1 8.85 33,72,100,155,188,217,263,303,348,396,424,450,474 MIKERLMEVVQINTPIAVMF SLFTNVRSGTKAAYEKMLKE 13 cj1187c 13 out 3 428 4 1 4.64 18,43,72,120,169,205,255,277,302,347,373,396,425 MLAFFIFLSTLVLLFWRPWN CKFGFLITLPVLVFSLFALI 14 cj0560 13 out 2 442 1 0 1.16 37,69,116,152,186,215,237,261,287,338,377,400,429 MSSIFSTLSPFRLFVKYAVP EFCVLILAWIFLKRIFKDLS 15 cj0366c 12 in 12 1040 9 0 -9.97 28,364,386,408,462,492,555,888,910,938,986,1021 MFSKFFIERPVFASVVAIII FFYLLENFNEWLDKKRGKVH 16 cj1588c 12 in 7 431 9 0 -15.69 40,73,114,136,177,205,264,297,335,357,389,424 MRKSKFGTKEIKILGLSSLG MIFLALLAICAVFIVKDKIK 17 cj0981c 12 in 6 415 9 0 -14.91 34,65,107,129,170,197,254,286,325,347,370,396 MQKKYKNIIYASLGGILEFY CVFLLKRVFARSKIKELSIV 18 cj1033 12 in 6 1005 9 1 -9.74 28,340,364,386,437,465,526,853,875,899,950,985 MFKLAINRPITVLMFFLALM FKFCFKLDSKLRKIYEREKL 19 cj0250c 12 in 5 436 9 0 -13.83 40,71,113,135,175,204,260,294,327,352,386,422 MSKTLNQKDIKVLGLSSLGG IALLCAFIFSYLNNTQRTYS 20 cj1490c 12 in 5 488 9 1 -10.43 37,80,118,154,183,238,267,301,336,379,414,464 MHPGNVLNYDYTVARYFMFA KTIACGRVLDKEPKSASPMA 21 cj0035c 12 in 3 400 9 2 -15.29 33,69,107,129,158,185,247,273,313,335,367,389 MQKHTKIHGFAKFKLIVILA MCACVLVANMIYFLIKIKEK 22 cj1257c 12 in 3 394 9 0 -16.85 31,65,108,130,158,182,230,259,297,320,357,380 MENFNRTLLVCWFGVFTTSM IINAFIFLAFEKKYIFSNQG 23 cj1375 12 in 3 431 5 1 -5.81 29,58,95,117,149,174,231,257,290,312,350,372 MLNNVLPLSFIVGTRFFGLF KNLVVKFDSKLTSKEELEGK 24 cj1241 12 in 1 399 9 2 -11.29 32,65,97,121,149,176,226,255,295,317,356,379 MQNYKKALFALALSAFCMGV LLFAKDKLNYKKFQRKSFTK 25 cj1687 12 in 1 434 9 2 -15.00 60,109,132,161,209,231,271,309,343,365,398,425 LEYNKIKKVKIMNDKTYKFH SIVIFIVCIVFLFLKQKPRI 26 cj1369 12 out 7 439 6 1 6.12 39,73,114,151,179,203,261,313,349,371,405,437 MSFFKLKENNTSFKTEVIAG NLGIIVLSLLSLGNFLLMAL 27 cj0088 12 out 5 445 3 1 3.72 30,67,117,158,188,248,281,313,352,374,396,441 MDIMIILQVIVLLGAIFIGI PGVLAIAIAVALGFVLAPML 28 cj0339 11 in 10 453 0 2 -0.36 52,85,128,189,217,279,314,346,372,410,434 MTNQQIDGIADKNFNTPEGR VTTFFAPETRGRDLNKIEDA 29 cj0484 11 in 5 422 9 2 -13.72 50,86,124,146,176,208,276,310,352,394,422 LETCYNLLKGKVMKHANSIK YIENHFGVEFGLIVLALIAI 30 cj1625c 11 in 5 416 9 0 -13.71 43,65,107,150,177,216,262,309,356,382,414 MNTPKWTSHDTRWVLSLFGT LDLFVLVMGIVAISAAIHDL 31 cj0006 11 in 4 435 3 2 -3.32 37,82,108,131,165,207,265,304,346,375,434 MILTLLTNPIIISVVLMTLL PTFIFYNGPLLILGSIIAMF 32 cj0486 11 in 4 418 4 1 -4.25 30,68,104,126,161,205,256,294,344,380,405 MTDSKNIKIAIVLVTSLFFL FLYVAWYGFIGSKVRKNAKD 33 cj0999c 11 in 3 365 7 1 -7.44 34,61,98,123,154,184,206,252,288,324,357 MKTSFLAHSVAIVRSNFKGL LGLVLIFGGYFLTLAFKGIL 34 cj0203 11 in 2 448 2 2 -2.51 24,46,102,133,166,217,280,322,370,412,447 MEIFLALLGFFSLGLIVWLL FFYIWGISIICLIFAEVAGI 35 cj1373 11 in 2 823 3 1 -3.77 35,262,295,322,370,398,452,682,711,769,800 MFAKLLKFFISRPKSTFFGT ITIYSKKTKFPNQHKEHILK 36 cj0619 11 in 1 438 6 1 -6.43 36,71,107,160,182,209,259,288,327,364,407 MAKKQLSLTRLSFPIFWDLL LRGMVNSYRWKSKKWQGKAL 37 cj0935c 11 out 13 444 1 1 1.74 57,110,159,189,233,270,310,332,359,399,440 LSSKFSKIGFILAVAGSAVG VFLRFISPLAVVIVMIAAFL 38 cj1619 11 out 10 419 1 2 2.00 38,69,113,175,202,252,286,318,346,384,408 MQELTRTKKIRSIIAASSGN AIFTIIMLIATLCLPKKSEL 39 cj0903c 11 out 7 488 9 1 10.90 46,94,118,172,224,253,282,339,389,432,454 MNLDIMLDFANKASDIIANK SGIDPKFNASKLGIKNAECW 40 cj0025c 11 out 6 461 8 2 8.44 31,58,109,147,204,252,288,312,369,394,423 MDKQFFQDFLMLSQAHTIAT MTSALCTAKNLKALDKEIYN 41 cj0671 11 out 5 474 5 2 5.84 40,75,126,166,202,267,315,347,388,417,467 MDFLTSLSEAGQFAIQIIIV LIGVITSCIAGYFIAMAAGY 42 cj0611c 11 out 3 471 0 2 0.36 34,69,109,146,175,212,256,338,381,427,459 LPYYGQISLWIEGMTYFSLE ILLLVFAFMPDGIPDFIYSS 43 cj0850c 11 out 2 395 9 2 9.09 33,75,112,160,182,217,258,286,309,350,373 MSPKKIIKSMTALFAGMAFL KPNILNKKFKKKPGNMVIFD 44 cj1040c 11 out 2 387 7 2 7.16 29,66,111,155,177,225,258,297,319,350,376 MASFKKIFWINVTIVIIVAF VFVGILVNIFGYLSYKSQII 45 cj1654c 11 out 2 389 2 3 2.56 34,79,117,159,188,217,239,280,310,350,379 MNNIVHKLKTLVLNEAFGGV IASFCSGIWGFIYLKFFTTR 46 cj1655c 11 out 2 382 3 3 3.35 31,76,113,155,186,215,237,274,307,345,376 MQMIKKMVLSETFPGILLIF AILVASFLSAIVGFIYLKIV 47 cj1684c 11 out 2 391 8 1 8.21 29,56,120,142,167,199,255,294,323,352,383 LHQSVIDTQALIDLKILIVI TALFEAIIVMSMIKFLSNSK 48 cj0174c 11 out 1 538 6 1 6.46 31,120,159,208,262,312,351,392,421,475,525 MYKTLKYYKLGAILLALFLA FLSLMVVVWMDKITRKDDVR 49 cj1185c 10 in 125 416 3 2 -3.21 63,111,145,172,211,273,317,341,375,405 MAQIRKANGLVDWLDQRLAV LLLLIVVLPVITIMERKGAK 50 cj1688c 10 in 34 421 9 2 -10.75 28,78,124,159,189,224,279,318,376,398 MNRALTNKILITLAFLFAYR MRKIEAQIYMSKYQTLSAVG 51 cj1192 10 in 21 458 5 1 -5.41 40,74,111,183,225,259,283,341,373,412 LETLSQTLAERKPPLYKRII DWEKFRYAMDNPEKFHNAGM 52 cj1194 10 in 5 508 7 9 -7.16 37,59,87,128,151,194,364,411,462,500 MQKDNLIAFVIFIISTIAFV LPAAGIMAALVFLGFKLSLG 53 cj1097 10 in 4 407 3 2 -3.78 32,63,102,160,198,236,267,315,346,375 MFSKIIQSYAKGNLIVQICI SSTDVLFTAICSKNELNYNI 54 cj1231 10 in 4 541 3 1 -3.72 36,71,107,129,167,198,242,284,309,372 MDNFLEIFLITVAIAIVLNV EKVIARNLVQEALECRIHKN 55 cj1126c 10 in 2 713 0 0 -0.90 31,117,186,226,253,280,350,389,425,581 MLKKEYLKNPYLVLFAMIVL DKNLFDLVINSRDAKVFKLK 56 cj1500 10 in 2 402 9 3 -13.35 35,97,131,160,215,246,286,313,351,388 LNSFKQKYLINFWDNSRSMI ILMFVFVVFYKKHFFKNQLK 57 cj0385c 10 in 1 310 9 2 -21.87 29,56,95,117,140,173,202,243,281,303 MLKVIKHNLGIYFMILACLD FLGIIGIIFGGLILVKNKGK 58 cj0461c 10 in 1 395 3 1 -3.94 36,65,107,129,181,233,273,320,355,384 MNYIELLKNNKNIRILASVQ LLGMIFIFAAFYWKWFYKKY 59 cj0557c 10 in 1 361 5 0 -5.88 50,98,127,170,214,238,261,283,307,340 VNKIEILKQHFKEIAKLNSS PYLRVHFERIAKYIFRIKQK 60 cj0601c 10 out 25 447 4 2 4.12 59,107,163,190,235,272,315,360,400,442 MQRQTWSSTLTYILTVAGAT YYVKYIVPLIILIIFIYGIL 61 cj0934c 10 out 10 446 7 3 7.16 58,113,161,189,233,270,319,362,401,442 MRTYFSKIGFVLTVAGGAVG FFIRFISPIAIILVMCYQIF 62 cj0860 10 out 4 290 9 0 14.05 20,53,83,111,136,168,198,226,248,280 MGVFLVLLGGIFWAISGVLA IFAFVLIILSVILNAKKTKV 63 cj0937 10 out 3 337 3 1 3.60 53,82,113,146,181,214,243,274,304,333 LVFLKNLKNIKIFFKYKEYN AVAFGVLFAFVSMPILIWTL 64 cj0832c 10 out 2 577 2 1 2.14 55,124,166,213,255,323,376,411,455,562 MNKFLVSLFLPLVAFANSSE VLPLNFILIALLLRLIGKKV 65 cj0430 10 out 1 408 7 2 7.65 27,64,90,128,167,189,228,257,284,319 MEKIKNYKLIIILLSLDLLA KKIVKVKLGKYEKVYQILNY