--- -------------------------------------------------------------------------------- --- --- All proteins with at least 7 transmembrane helices in Campylobacter jejuni --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 66 cj1038 9 in 17 387 1 3 -1.56 27,60,90,127,167,207,313,349,378 MVADKRLFYLSCILITIGIV SMWAICIGIGYVLMISKKVK 67 cj1016c 9 in 4 350 0 3 -0.13 29,54,76,126,149,191,235,276,325 MMVRIKVSHLIFLIASIIFI GYYELSDVIRGIKKRFKRSK 68 cj1353 9 in 1 312 3 4 -3.95 28,57,84,113,145,191,238,281,304 MRKKMLILSFLTLNMIGIFI VVINFLGGIYFIYLVLKGNK 69 cj1544c 9 in 1 298 9 2 -10.46 23,53,91,116,161,200,236,267,290 LTRTKYLYILLVIAMFLWGS LLGCALAIGAIYFINIYGKK 70 cj0603c 9 out 26 567 9 1 10.49 20,194,236,265,316,346,382,408,435 MRIFGIILLSFCLCFASILS KEKLKITGFISADDLLKKIE 71 cj1282 9 out 15 366 4 3 4.20 35,61,86,122,165,198,284,321,351 LFRLDRRILTHFDYIQPILF FFGILQHLITFRYFWTDIKA 72 cj0081 9 out 6 520 9 0 14.05 39,75,115,149,207,239,410,446,494 MNELSSVDWSRAQFALTALY QIKKGFDAHAGHTPLMGKGE 73 cj0433c 9 out 5 353 4 0 4.24 39,96,147,180,217,248,290,312,349 LYYLSDLSHYAFFTYISVRA VRFWMIALLSNLLALASIKL 74 cj0082 9 out 2 374 9 0 10.74 28,90,112,142,189,229,274,307,353 MFFGLELEGLQIYWWLILSL WNAMDKVKITREEIANDDHA 75 cj1211 9 out 1 419 2 0 2.01 33,167,196,237,266,295,330,356,406 MSLWNSFSYSFKEFHYLFFS FKYLAFLCIFANFIPFIMIV 76 cj1615 8 in 19 335 0 4 -0.38 37,87,127,168,214,264,301,326 LEMAETTMLNLNTHSKILVI LTAFFGAPIFLYLALSARRF 77 cj1352 8 in 14 332 1 4 -1.81 37,81,122,167,212,259,299,323 LIIIITIRKDLFFKHILSLK TTGVLGSLIFIFLLLKRKVY 78 cj1398 8 in 5 613 5 0 -5.73 238,297,379,405,465,524,572,607 MKKIKIALVGQPNVGKSLLI TCTSAYIVAFIGLHIAKILL 79 cj0825 8 in 3 258 4 3 -4.73 18,59,95,124,152,175,220,254 MIFFIIILGACLGSFCTSLA MIPFLNIAFVAVLFYKNLGL 80 cj1468 8 in 3 254 1 1 -1.67 34,56,100,122,152,175,211,247 MGFEHLNTIYYFILFFVALF KTLFLIVVGATIIKVAWDYF 81 cj0553 8 in 2 317 9 4 -9.53 22,65,120,148,186,224,247,315 MISLDLLYYIVGILFLVFGI MSGLVLLVANIFLMYFLAFR 82 cj1017c 8 in 2 298 9 2 -10.65 37,76,112,162,210,244,266,288 MDSTLFLQQLVNGLSLGSMY VFILLFRPTGILGINFEKSR 83 cj0164c 8 in 1 294 0 3 -0.56 35,60,120,144,177,239,261,291 MNTFWIKFKDILELVVFKHS TLNGYLSIIFFIFIWIDLLW 84 cj0615 8 in 1 362 9 0 -10.57 41,95,164,206,232,292,315,351 MKKLFKKRQKASKSFKRLCK LLVVLNLSAILLRKYFQGKL 85 cj0730 8 in 1 279 5 3 -5.83 33,62,91,120,162,209,238,267 MKEKFLAFLSILPFFIVFTF IMLVVTFIANFLSKKYNFKV 86 cj1572c 8 out 72 332 8 3 8.97 30,98,136,178,212,267,295,332 MSDFAFFALETLIKCIIIIA YLILIPLAVLNLLITALTVL 87 cj1179c 8 out 8 255 4 2 4.55 33,59,90,112,148,191,214,236 MEFVNYLGDKNVVTFMLLLA MQYFKNLILELFTHMQTLFF 88 cj0291c 8 out 7 319 7 2 7.23 32,84,121,188,229,261,284,313 MALGLILCALVNVLLGFSNS SCVGLHGFMSYVVGASLGTK 89 cj0263 8 out 4 291 9 2 13.33 29,59,95,175,200,230,253,289 MQFTFEQIFIAMLLTLFAGF SLYGLIAGMAIMALSLNLLG 90 cj0343c 8 out 1 261 4 4 4.57 31,60,100,122,159,193,220,250 MEITDLPYLIIGIISGIASG YALSILGTTHSLLNKLNFIN 91 cj1658 8 out 1 698 0 0 0.59 20,460,486,525,609,634,663,687 MIMKIFKIIFLIISIFLSSS LIMLIIGILITKQISKKGVK 92 cj1660 8 out 1 467 9 0 16.80 25,48,88,110,141,179,216,267 MSIYFVHFLISVLPLSILMA PTKYVEENEAQFLIQRRNDV 93 cj1155c 7 in 32 785 6 0 -6.70 185,218,254,276,432,463,770 MIMKCEHCKLDYKQAQMIEY AAISMSFSSIIVVLNALRIK 94 cj1161c 7 in 31 699 5 0 -5.92 105,129,164,188,347,376,679 MEELRIKIGKMTCVNCSNAI ALAMCFSSITVVLNSLRLKR 95 cj0677 7 in 17 681 8 0 -8.52 52,82,243,269,595,630,674 MSKKQNKLITKEILNNAIKG PFIGIKIIDIPTAWILRILG 96 cj1347c 7 in 13 241 4 0 -4.69 36,76,122,144,186,208,241 MFNTTRIISALVMIGAIIII GGVLDRIDAVIIAAFVMVAL 97 cj0236c 7 in 7 231 4 5 -4.31 51,75,107,134,170,192,224 MSLYDRDYSRSKEFENTRSS YLDFVNLFVSLLNILRSFNS 98 cj0141c 7 in 6 267 1 4 -2.00 35,76,109,151,194,223,255 MLEILNFTFFQNALLGAILV CIIAIACFGFLVHLIGKFLK 99 cj0723c 7 in 3 395 2 3 -2.47 18,78,109,156,185,299,330 MTLIAILCLYTALLSWISYA KIYTFFYLSHPSISDRIKAL 100 cj1528 7 in 3 248 2 5 -2.27 35,57,96,145,177,201,226 MMKLKFRKSLILNALLFYIL AQTNPLPKEQNTTKIELKIQ 101 cj1646 7 in 3 369 0 0 -0.62 142,180,216,277,299,325,363 MNTNFKFQNNTLFIFGIWDK AIFWVIAFDALFSVILTSTG 102 cj0421c 7 in 1 320 2 1 -2.22 25,52,76,99,151,189,262 LIMFLLDFLISLSFIFEISA WQESEENLDKNLQSLRARLL 103 cj0731 7 in 1 259 2 0 -2.57 37,92,121,149,195,217,255 MNENLSLKAKIYHYAVLFLV LVIVYFVLIFITTFIASLIK 104 cj1095 7 in 1 450 2 0 -2.66 51,75,109,134,163,197,328 LQITLQEVTMKLKLNFLPYF PKKLLSKDWKNLSKEIFNDK 105 cj1166c 7 in 1 258 9 1 -10.32 55,94,141,170,192,222,248 MEKPDIQRLTNFLIIYTKTL ICCIALGIYMTLSISDFGIL 106 cj1448c 7 in 1 260 0 3 -0.70 46,78,125,163,189,211,247 MLNVIYALFFRELKTRFGKN LFIGLFIYYYNRQALTAVKK 107 cj0940c 7 out 30 261 1 0 1.22 42,84,122,149,187,211,250 LSLFTQKNKNFKPLKPLSKS YLVLTLPISIFSRYLERKCQ 108 cj0407 7 out 9 271 9 3 18.61 38,78,126,151,203,225,262 MEFWQHIYSNFNVIAFSIFG FIMFITALLVYICIKFKKVN 109 cj1582c 7 out 7 264 3 0 3.95 23,88,125,147,199,221,249 LILFKFLIILAPLIFLFLCA LLFLPLLWLGNFLQKIWGIR 110 cj0186c 7 out 6 239 9 4 17.36 33,73,100,142,170,205,227 MFEWIFSIDAWITLATLSAL MAFALVVQILNILDQKKEKN 111 cj0587 7 out 3 334 9 0 9.27 46,94,117,154,192,221,249 MSLLKNSSYILTLLSLFGFL GIWWFSKEKEDLEKRINESL 112 cj0773c 7 out 3 308 9 3 11.78 81,122,148,204,250,280,302 MGGGIMNEENISIVSAFFSR FWQVIVFILFLGSLLYKGFK 113 cj0826 7 out 2 341 9 0 9.06 33,55,77,116,282,308,330 MKLSLRYVLNQFLSTNLSIF IFSLSLFVSAYCFKKMILSR 114 cj0795c 7 out 1 475 0 1 0.05 26,70,114,141,163,342,435 MLINTLYFINSLFFNFCIAF LAKETKHGDLILFSNDAPSF 115 cj1363 7 out 1 347 0 5 0.01 35,80,171,219,248,284,337 LQNGKFFLISFILVILFLLL ILTFFVSTLRMYVILKDKNL