--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Campylobacter jejuni --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 28 cj1167 1 in 46 308 1 2 -2.00 127 MAKIGIVGLGYVGAASAYSI IKLENSKQQIKNAIQSVKDK 29 cj1034c 1 in 27 268 3 3 -4.00 112 MQIVQTLETINVNTDDISVF EQFEKIQIAYDNLKALYKNN 30 cj1727c 1 in 26 423 1 1 -1.48 95 MNFNKETLALHGAYNFDTQR LSIGLENSDDLIADLKQAIE 31 cj1393 1 in 24 348 4 2 -4.62 58 LEKYRELRKTDRVLSYGARG GLEDTKDLIADLTQAFDSIK 32 cj1344c 1 in 17 335 4 3 -4.80 100 MKNLILAIESSCDDSSIAII KEFVSVEEDILSPKNKNFSR 33 cj0827 1 in 16 241 4 3 -4.67 199 LMKIKIIFSYDGSAFLGSAT KKQYNHFLAPPNGLYLSRIC 34 cj1008c 1 in 13 351 5 2 -5.44 109 MQVEVKLKENAYKVYIDELE KGLIKGDISKEDIIATLREF 35 cj0303c 1 in 4 249 2 4 -2.76 31 MKKFVVFFGILLFVSCLNAQ NEFIGSSKAKEIFKKYGFST 36 cj0659c 1 in 4 182 4 4 -4.41 37 MNKIEVFLQNLNPREKFLFI KLYNTQGLKLKLDLMFKFVN 37 cj1302 1 in 4 520 3 1 -4.00 180 MNLFSPHLKRNELIKFAKEL KNSALIPFQNLNFKGLIIHE 38 cj0365c 1 in 3 492 5 1 -5.00 324 MNKIISISAIASFTLLISAC SEDTSKNIKEESKNLDMSFR 39 cj0034c 1 in 2 233 0 4 -0.79 24 MKTNNIFMALAIVLASLILA KNTPYIKTIRVVSTIEYYLK 40 cj0221 1 in 2 40 9 9 -10.17 36 LEFISGYVGAMDLKGDIASL LKRFSYIPLVVKTAFFIGSQ 41 cj0983 1 in 2 372 4 2 -4.00 370 MKKGIFLSIGIAVLFSACGN EALKIILPFIMFSMLMGGAS 42 cj1630 1 in 2 227 4 3 -4.58 29 MKTLFLNHKYQASYITFIVF HYNGDLRITLPIIYDFKTLR 43 cj0073c 1 in 1 218 9 4 -10.00 215 MSKIDEISSKSKANILEHLK DIELITVFGVHGPQIAHIII 44 cj0099 1 in 1 217 2 4 -2.00 139 MEKGLKVKIVCVESIDSTHL NSFLYEDGSILLGDKRVYSL 45 cj0181 1 in 1 248 4 3 -4.67 24 MKSSVIFGFVLSLILHTLVL GDKISFVMPIDYNIKDYLGK 46 cj0353c 1 in 1 486 1 1 -1.71 437 MAKKTAVVDLGSNSIRMVIF KDELKKIAKPATIALAINQK 47 cj0431 1 in 1 204 9 4 -17.00 22 MIKAFSLLEFVFIILILGIV NYAYEKTLAKNNSDCIIRLL 48 cj0630c 1 in 1 321 9 2 -14.00 250 MYRKELQILLSKDSIPNFFF KLVKKEFLISNLLKLARILK 49 cj0843c 1 in 1 541 6 1 -6.00 413 VIKKILVFLFIFSSLNATQY IKISDIFENLIQNKANDLNK 50 cj0872 1 in 1 223 8 4 -8.50 34 LKILFNQGYNMRNFFCKFVL PSAINSMQDLEDLVKKLSNM 51 cj0878 1 in 1 48 9 9 -17.31 44 MKNLSIQEKKDLDNCVFQNL LSVVFKNFYLKIKAFILNNT 52 cj1113 1 in 1 265 1 3 -2.00 93 MQKEFFQELQDILYEKNITI QARIKAGFTQEECEVIEKFY 53 cj1289 1 in 1 271 8 3 -8.57 25 MKKILLSFAFFASLASANTI QNFIQDYFDKLRSKINIEYL 54 cj1300 1 in 1 297 4 3 -4.00 116 MKENIEKLFQAIAQKNPIHS YSLEKALKFKNAITMAVVLN 55 cj1305c 1 in 1 405 9 2 -16.00 213 MLINQTFEIDSCDDVELNIK CGNKVFIFKDVGDKFELVIK 56 cj1316c 1 in 1 378 2 1 -2.00 163 MKFCKKCVMPDTKPDLHFDE NGKFIRDYDGSLVRKDECVL 57 cj1381 1 in 1 176 9 5 -13.00 22 MSKFALILSFFIALFMSACT ERCQLSLENKIINQIVSFFY 58 cj1410c 1 in 1 139 9 7 -20.72 54 MKRVRTKIRANFRRRVKRTL REQPVVDFILSRNLDKQTIG 59 cj1461 1 in 1 227 6 3 -6.00 113 MNDEFISVKDFFNHNEKRKK QNFQKVKEKKFGSTSLSFYS 60 cj1472c 1 in 1 195 4 4 -4.19 39 MQERIKELELRYKYFLLKKY EAQSALDAYINYYGLMELDG 61 cj1552c 1 in 1 488 1 1 -1.07 60 MIRTVMDFKFVLRLLEANQF IKQQDPENKSTKHVKYVPFF 62 cj1725 1 in 1 199 9 5 -12.59 172 MKKSIAIIGGSIAGLSAALF AILSDIKGAVSVYHDTPTTR 63 cj0954c 1 unk 62 256 0 4 0.00 18 MTLVLIILVVLVFYWYYKTW GVEKFQKINEAYEKVKKHLE 64 cj0127c 1 out 23 280 3 2 3.79 225 MNFADIFSKIRRQQPSVKEA IVERGEQKQYLSDVLKFFSG 65 cj0192c 1 out 23 194 9 5 10.80 105 MFIPYVIEKSSRGERSYDIY MSAQEAKEYGLIDKVLEKSF 66 cj1076 1 out 20 243 5 3 5.76 170 MLYILANGSMATALAYGLKD ILEQKGIRGSFFEAINASSA 67 cj0534 1 out 19 289 8 3 8.04 96 MSILVNKNTKVIVQGFTGKE YGIHVVDSPALIGEEIQKIL 68 cj1399c 1 out 16 497 7 1 7.80 374 MAKLSNEELKNILEDRIKKL AYSILKAFEDNIAKISSLKA 69 cj1267c 1 out 15 379 9 2 21.27 372 MIDYHQIESRLSALEKLPSL TLTGVAIAAHAVISSMQKDK 70 cj1634c 1 out 15 362 4 2 4.14 344 VNTFGTRLKFTSFGESHGVA DCLLLNASANLNNLKNAYGL 71 cj0102 1 out 14 141 9 6 17.24 28 MFEDMHPSIMLATMAIFLAM EHLNIHLSELKQALQNNIKK 72 cj1652c 1 out 13 250 0 3 0.71 77 VKIGVFDSGVGGLSVLKSLY ASSDVESLKNTAKIWLNLLR 73 cj0154c 1 out 10 274 9 3 13.40 129 MLYFIPTPIGNLSDISFRAL LSKINGKNAKEIYQKLLLSQ 74 cj0577c 1 out 7 342 8 2 8.81 314 MNKDLLLSSYDYTLANELIA YELAIKEKYRFYSYGDAMLI 75 cj0683 1 out 7 145 2 6 2.86 26 MNKAFTLLELVFVILILGIL IYDSKEGLLKCIGSSRCKDL 76 cj0716 1 out 7 446 9 1 14.00 100 MWAKNSWKNYPIKQQPIYPD NADQALELAFLIADLVKKTR 77 cj1346c 1 out 7 356 7 2 7.92 101 MILFGSTGSIGVNALKLAAL KISSIEEVFEYDFKTREYLR 78 cj0453 1 out 5 430 9 2 10.68 323 MKTQMNYAKEGIFTKEMQIV GKMCAMNTMNQILKGEDVSL 79 cj1150c 1 out 5 461 9 1 9.00 295 MLEFLSQQKPKILIIGDFMV LIDFEEGFSTSKIIEKIKDK 80 cj0641 1 out 4 286 8 3 8.80 216 MQNKIDYKNIKKIGLVTRPN LIHPKNRDYFQILKEKLHWG 81 cj1553c 1 out 4 500 9 1 9.60 374 MAKKKEIKLEDALWKSADKL SQIKTEQELSEIILKNLEKI 82 cj1094c 1 out 3 90 9 9 24.00 25 MAENSILTSLLPLVVLFAIF LNEDNVTAKISREFIAKKID 83 cj1433c 1 out 3 368 8 2 8.00 198 MQRFKKWFLSIIKNFKQHEK SQWAEIGKWRSSNKTKHEYL 84 cj0786 1 unk 2 57 0 9 0.00 18 MVFLIPLLIIIGVIFGIDYV ELNSSLEKEKKEYIEKLFKT 85 cj0811 1 out 2 308 5 3 5.38 42 MNEEKNYELWLDNYFFKPNF NIELKDSLREKIKTYIKEFE 86 cj0945c 1 out 2 447 9 2 11.24 63 MFDKLEKILAYDNVFLSGGA NVIEFYKKHNFLDLEIQEQI 87 cj0079c 1 unk 1 268 0 3 0.00 21 MQKIIVFILCCFMTFFLYAC QWFLTTPPFTAKPLYRQGEV 88 cj0177 1 unk 1 283 0 3 0.00 21 MKFYTILSILFISFMLSACA LSYGEIDLKDSDYVLIYKGE 89 cj0456c 1 out 1 319 0 2 0.00 171 MLFLLKKIFPQLFISIILED IKTKQINTLDLMIELMRKEV 90 cj0538 1 out 1 185 2 3 2.63 144 MKYQLRFGGEGGQGVITAGE DANAKAFDLGVKYATQAKPH 91 cj0566 1 out 1 488 9 1 16.00 345 MENICQFIIENIDKNSLNTK NDNLSSSDLEKLSNFFKLKN 92 cj0769c 1 unk 1 220 0 4 0.00 18 MKIIFLTFFIVINYIQAASL KNKEGKVMQGIVVGKNRMII 93 cj0939c 1 out 1 126 9 8 10.95 80 MLIIGHKLLKNLDFSFIESV FYKLKIDGIILKDNIDNFPK 94 cj1195c 1 out 1 392 8 2 8.00 316 MIIKNAKIYGDSLQDIEIKE EDKLFGKIKMHIIKGKNILE 95 cj1275c 1 unk 1 397 0 2 0.00 21 MRKNILIFFCFFLFVDISLA LTFEVTQKNFHINPLELISL 96 cj1281 1 out 1 31 9 9 11.11 22 LHFFLRGFDKFKILVYNYSF FKILVYNYSFILPTEGKFCL 97 cj1328 1 out 1 384 0 2 0.00 126 VSKRKICIVSATRAEWYLLR IKTCLKNVNLDTILHKNFID 98 cj1451 1 out 1 229 9 4 14.33 169 MTNIEILENMLKLQQKLNDE LEQELDFDTIYKKLEECYKK 99 cj1488c 1 out 1 87 2 8 2.90 51 MEHLSIVFDVIKNLITFDLA YANLALKDDIDDSVLESKRS 100 cj1674 1 out 1 286 9 3 20.45 71 MKKITIAHSPDADDIFMYMA DKIIHVNDFLIPSEYEEARN