--- -------------------------------------------------------------------------------- --- --- All proteins with at least 1 transmembrane helices in Campylobacter jejuni --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 317 cj0490 1 in 85 393 3 3 -3.05 80 MQEQGKTRVLASIEINFTAD HGLEEYLATHVVYLQYNTNK 318 cj0856 1 in 16 282 9 4 -15.08 30 MEILKKLYKFSQSWTGTVVI VDTLENDEQYIHDHDDEDKL 319 cj1537c 1 in 16 657 2 2 -2.24 163 MLNQNNQELFKPSKEFSRNA STLEDSKVVETIVKLAKAEF 320 cj1665 1 in 14 167 9 6 -10.88 23 MGIFRIQAYFFALIIALFFV EKFIGLTPYSILEKEIKKVK 321 cj0037c 1 in 13 347 9 3 -15.28 192 MKKHILLLGLCLSLSLSAKS PKEYIKVKYGPWKNPNHFPG 322 cj1629 1 in 12 129 1 9 -1.73 33 MLKLPKNEGLNIVPFIDIML IIDFLKAKEHENFQILTEKN 323 cj0834c 1 in 11 439 9 2 -18.92 44 MRLKISNLKINSNLILNNKI DYLKSLGLKANENLFYGGSL 324 cj0812 1 in 9 470 5 2 -5.96 233 VKLVESRNVNNVSSFKEALI SDEKVFEARNIKKEILDWMQ 325 cj1667c 1 in 6 50 7 9 -7.83 34 MKKHSKYKIYLNFKLFKLKI YIFAAKTKSTLIKSLFLIKF 326 cj0059c 1 in 4 280 0 5 -0.51 68 MINDFLKMFTNECISTIEGL GNFGVQITEIGSKKERLEQL 327 cj0336c 1 in 4 247 9 5 -10.30 40 MAKKHKCPECPAGEKWAVPY ADTSTQKSVLELINKIGTKA 328 cj0678 1 in 4 136 2 9 -2.20 28 VICLETLLSFFVVMLILCTL FLDENPQITKEQIPLDFRIR 329 cj1358c 1 in 4 171 9 7 -22.07 33 MIILRRKILKKTSNLFTIFL HADKSLNCASCHKDVGHKHG 330 cj0397c 1 in 3 192 2 5 -2.71 54 LGLKDNLKAVKNELNTEEQF KENSSLNQIAKNLKHYQGIT 331 cj0472 1 in 3 59 9 9 -23.33 54 MEKLITYFKLSKAELRKVIF VISLFLALVDWLMSSIVSAI 332 cj0658c 1 in 3 64 4 9 -4.45 46 VTKQEIQKLDTNFLGHRKPL SSTLPGGWITDNYSGQKRLY 333 cj1378 1 in 3 440 4 2 -4.00 153 MNKFRTFPQINTLIEDESLK RTIRENELQKLILTINQMEN 334 cj1525 1 in 3 45 6 9 -6.09 37 LLIFAFYITGTPIPKAPSRE LNVLLDSYLLSQRFLKVSFL 335 cj0046 1 in 2 57 0 9 -0.98 46 LQLCFGLYLLLVGLEDNSWH MPFIAIAIVALSGITTTQLK 336 cj0404 1 in 2 278 9 4 -23.08 44 MENQKNEFDDIILEKSNKSE AAELAKIRKDIAKDAFSFTL 337 cj0525c 1 in 2 602 7 2 -7.43 32 MQEYKKNRVSKVAFAYCMAL ILINEEFLTPIQDNNQTSTN 338 cj0633 1 in 2 360 9 3 -21.33 30 LSKKKLVQIQRYLIIAILFL EQSKDLLKGVDLVYLSEIYG 339 cj0911 1 in 2 186 9 7 -30.68 23 MKKNIILFIVIVAIILGVIF EINDLNPQEILRELRIFLNS 340 cj1190c 1 in 2 474 3 4 -3.43 53 LIYDFKKFSIKRGKFMVKNG IVNDIKSLEQRSAEILAKLK 341 cj0067 1 in 1 518 4 3 -4.00 112 MSIACCIDNNSINCSKAFLN QFILNAKEVDKLFIKGKECK 342 cj0084c 1 in 1 36 9 9 -20.59 35 MIKRCPKMGKLQYFEKIYTY KIYTYIGLNLILLYSLLSFS 343 cj0111 1 in 1 259 4 5 -4.33 30 MKNYGLSNLNSFLLALAIYI PQNKNISITMNLRDEVKVKN 344 cj0152c 1 in 1 312 6 4 -6.00 115 MLNWKKIQELNLKEVAAKTQ DGKITSISAAEFVKLNKGKE 345 cj0268c 1 in 1 362 5 4 -5.95 63 MPADLNDYFNKKNGNSNNNG AVPNIWVDTKDAKKQSAANM 346 cj0455c 1 in 1 114 6 9 -6.67 41 MTYSFIQPRKKPIFTLFDKI SLRNLFDIIVKTDNITLESV 347 cj0507 1 in 1 183 8 6 -8.00 115 MLILASSSISRANLLKTAKI QQVGNLSTALGLDIQTLKAY 348 cj0529c 1 in 1 362 0 4 -0.20 70 VIFFARTINFLSNLIYNCSN VHIFSTNIDDHNKAINLQKG 349 cj0530 1 in 1 856 9 1 -13.33 28 MKKKILYIVVFFVVLILALF TLKTPFNLIKNIIQLPANLL 350 cj0660c 1 in 1 368 4 4 -4.00 225 MMKINSLNKINFIKSTDLLY AFKILDKNEETFNIILEVIH 351 cj0666c 1 in 1 42 9 9 -11.90 39 LEQNLLTPLLYFFKKIASKN SLMKFGYNFIIFKSILTKDI 352 cj0694 1 in 1 496 6 2 -6.29 32 MLTWMQHHKKYLVVTIWVST KQELVDELKKIYPIKIYYKG 353 cj0738 1 in 1 54 3 9 -3.03 51 VTVNDLVINTAVNTKVGGII FTNVAINNISIVAKKVLMWV 354 cj0776c 1 in 1 340 8 4 -8.00 23 MNLKIFSIIVGILIAVIVIL GLNTAQYFFPFCEIIEISSI 355 cj0778 1 in 1 267 5 4 -5.05 39 LQGRVNYRLIQFPLYYQRKV DFIKSQEAQKVWKKYTWKEV 356 cj0823 1 in 1 205 5 6 -5.37 164 MSMINSTLPIQMKVLAKSGY VSQENKIEPLFVFKRLFDFK 357 cj0892c 1 in 1 162 9 9 -17.00 27 MKKYITISILSILLLILLAV DDIIKELKKYKINTEVKEIW 358 cj0907c 1 in 1 38 9 9 -28.57 37 MPKKDIPIKKFLIIIDNLLK LLKQAFMICKNYIINKAALL 359 cj0910 1 in 1 150 9 9 -24.00 23 MRKIIFILAFAFVIAILYII RVEFMDNNKPIGFYFDFELK 360 cj1039 1 in 1 342 8 3 -8.00 116 MTIALTGGGTGGHLAIVRCL QKNGADMLIQKALFDNLTFI 361 cj1079 1 in 1 150 9 7 -36.00 23 VKKAYVLIWTIFLILLISLW EILLTKSIIIYPKENFWNLK 362 cj1158c 1 in 1 75 2 9 -2.67 41 MFKARNLDAQSFHNAKIFWD TIRLVTYMFLALIFISLKND 363 cj1160c 1 in 1 59 9 9 -9.97 32 MQQKCFCISKMIRFSKIIIL NSNFQFVSHVMSMDTKPDLF 364 cj1208 1 in 1 208 7 5 -7.78 54 MEKTDFRALQKIRLFKHSKL YRTYSRYSRTRYRIFSCKKN 365 cj1367c 1 in 1 782 3 1 -4.00 649 LLNKELEIFKKNLSSYTQSC FQKNEKLEHSEQKLVNLLIS 366 cj1408 1 in 1 178 2 8 -2.00 39 MDEELENEETKKKKGGSLVI INEILTDGFIKNVYFTDFVV 367 cj1483c 1 in 1 173 9 7 -13.38 31 MLETKKSFWPYGILLSLLAI KLKFYANQETVGFFSYELNA 368 cj1485c 1 in 1 33 9 9 -10.00 28 MSKALEYLIVIGLVAAAAIT LVAAAAITAWSVLTVNHLHI 369 cj1621 1 in 1 250 4 4 -4.29 25 MLAFFKGLGVGFLCLLLFVA SSPIISKKEQILNAKALFIC 370 cj1648 1 in 1 296 2 4 -2.00 28 VENRANYFFVGLFVFGVFFA QNSPADLIFKETKPKLGPGE 371 cj1723c 1 in 1 85 9 9 -9.52 36 LHLLKHFKEEEMKVKFIPVI FNGLPKILPVKFKISIQVLL 372 cj1728c 1 in 1 51 4 9 -4.76 37 LFFAPFKGASLALQAYLGSL QFIANSLLLGVGCNKIFSNV 373 cj0110 1 out 15 129 7 9 7.87 33 MPFDDEKPELNITPLVDIML VISVLRSVKNLGFNKVALQT 374 cj0180 1 out 15 136 0 9 0.77 38 MIKTEMAHKEEELSEINITP VMQKLKENGYGKIALSSKKM 375 cj1641 1 out 13 427 7 2 7.80 259 VKLKLENSFITDNTLECEKE KGIKYPFSDKVVVNEILKNQ 376 cj0197c 1 out 12 242 3 4 3.32 113 MIKIGIYGAKGRMGKQIEEC IAIWLSKQEAKMYSINDFLG 377 cj0328c 1 out 10 330 8 3 8.80 130 MNLGNTMLKASLKSIASYIP DAFGGGFTWGSALLKFGGEN 378 cj1303 1 out 10 353 6 3 6.28 134 MKTRFDKAKISGICVSVPEH SAVLNFKDLYTKNILIYTKE 379 cj0103 1 out 8 170 9 7 19.75 46 MSKLFFIIFLLPLYAFGASN SDPNMTLKQSEIIELMMKKV 380 cj1504c 1 out 7 308 7 3 7.31 67 MQKTPALLSDIGNNEDASVY NIQAKIIAKVVNKQENDIII 381 cj0231c 1 out 5 340 6 3 6.60 196 MQRKRIYNPSSNETLGDRKV SNFFESKVTNYSKGSISFDD 382 cj0674 1 out 4 73 9 9 13.00 53 LNLNTVISFITNTNLQHYSG RALCSMQMGNFMKILRVLLR 383 cj0675 1 out 4 105 5 9 5.58 67 VLTLENKFQSIATGPVAALE KEEGGGLFLVQWGLFLSFLC 384 cj0989 1 out 4 85 3 9 3.65 37 LKYLNDIFQNLVLKRKNMEF TTQKNRSLIEKNRSNIENII 385 cj1020c 1 unk 3 144 0 7 0.00 21 MIARWLFISSIFVVALFGIN QVKDLLEEEPAQKTKHNIFL 386 cj1128c 1 out 3 309 1 5 1.00 293 MPKLSVIVPTFNRQVLLEKA SIIPNNMIEKLSKIRVALCK 387 cj1203c 1 out 3 63 9 9 9.32 40 LIYILEFFKGASLALMLFGA LSLIFVLLIENHKLKNENKL 388 cj1558 1 out 3 57 9 9 11.69 29 MQSFLNTFKEFLYLFTELSV EGIFKNNLLVTKFQVILKLY 389 cj0032 1 out 2 386 8 2 8.60 302 GGGVLSYITSNKYTRAGYGE NSLVYKLYNLTEEEIKIIEG 390 cj0520 1 unk 2 146 0 9 0.00 20 LLMLGIYLLIAALSFLALYF GEEEAENLREFLMDEFEKLK 391 cj0588 1 out 2 253 6 5 6.04 180 MRFDFFVSKRLNISRNKALE QKSSIKGKEGNVEYFYYYIK 392 cj1012c 1 unk 2 149 0 9 0.00 19 LVIFCAALALLLFLGVIAYL KKEIDAYEHMGLAKRKIKED 393 cj1087c 1 out 2 300 8 5 8.00 45 VVKNKFTITITDINGSRHFY PWQSLIKAVSAQHPALAQKQ 394 cj1136 1 out 2 390 9 3 12.00 253 MKKVGVVIPIYNVEKYLKEC YDLWKIWQKIKGILDKINFA 395 cj1154c 1 unk 2 68 0 9 0.00 21 MNSIIMMMIGVSILAFFIIL LRDAIELERRKKEALDKKRL 396 cj1343c 1 out 2 171 0 6 0.61 26 MKKAFTILELVFVIVILGIL LSKNENFKNLASKTYLLIGG 397 cj0047 1 unk 1 31 0 9 0.00 23 VISIIVARGVIKTGLGEHLA IKTGLGEHLAYHFISILGKK 398 cj0083 1 unk 1 34 0 9 0.00 20 MLHALFLLAWPLVIYLSYKF IYLSYKFIMLNINQLEKDSK 399 cj0201c 1 out 1 219 3 9 3.00 45 MIIIKAAMFFLLKKIENGLF LFPQTFFENNQSVLIYESQN 400 cj0242 1 out 1 36 9 9 18.89 31 LRADYNAIILKILLINYIKI NYIKIIIIKVFIIYIFFKKL 401 cj0290c 1 out 1 37 9 9 28.33 28 VDYYGSWNAGLIMLLSACIL ACILCILCSTLCHFSAKKKH 402 cj0344 1 out 1 49 0 9 0.68 38 LVTLSIVKMFQNIIKYKDFI NLYLLIKINLDFKNFHKSLN 403 cj0390 1 out 1 820 0 1 0.00 110 MAEQEDIILEKPEDGLNQPR QYKTLPNNFKSEFFTFDINN 404 cj0457c 1 out 1 216 9 5 16.91 29 MQSVWFYMGKSFKIHCLTYI KAKEFLMKQFDKISLADQFK 405 cj0494 1 out 1 64 9 9 14.29 29 VSSNLAVDTILWGVIMIKIA ITKERNIFKEQLPKRIKIPT 406 cj0502 1 out 1 75 1 9 1.49 65 LHGIGGVCEGIATGLFASVK YDFFSSHKLYYFLRSFLVLQ 407 cj0568 1 out 1 93 6 9 6.28 51 LITYSNLSDVKKRIEDEFTH QLCGWDKQKALDKNKDLTKS 408 cj0599 1 out 1 317 4 4 4.24 36 MKNESKEDSNFWIAYADLMA IKFSIKNDNALKDVEKFFEF 409 cj0610c 1 out 1 336 8 4 8.00 22 MSVVRFFFILIIVLGLVVVV AREMSKLLLEHIKLKEENAS 410 cj0692c 1 out 1 312 5 4 5.39 266 MLEDDFIKERQNIRQKMLKF KDLKRRLENMRFQNQILDYL 411 cj0746 1 out 1 48 5 9 5.88 31 LLDLLLYGSVEIVFVWVIEI KYFYFIVFIEGFMGWGLFMM 412 cj0754 1 out 1 48 9 9 30.16 39 LFKKINFETNFTEKNNNQII LIFAIYFSKKTYIFKNYSKK 413 cj0877c 1 out 1 30 9 9 21.43 23 LQDFIIAKKLYFCFKYISSI LYFCFKYISSILNINEYYFK 414 cj0900c 1 out 1 59 9 9 10.54 32 VLEFPKNKVVFMEILDFILI MQKNKEREERFKKYKKGEQN 415 cj1060c 1 out 1 36 9 9 33.75 26 MLENPIPNSIIITTIAVVLA AVVLAFSALAVFLIKKTKEN 416 cj1099 1 out 1 573 8 2 8.00 507 MLEWDLSALFHDKEALQNFT WEIGIKEIQKLINEFMELQS 417 cj1159c 1 out 1 40 9 9 9.09 29 MAITSPVIYHIGYIAIILFE ETFIALTALKKVLMICLKLE 418 cj1256c 1 unk 1 220 0 6 0.00 21 MEMILFVLVMILLVLLFVVL GFGAKRVEFEFKDNTQKLDV 419 cj1467 1 out 1 254 7 4 7.50 58 MKNFIHLKAKLDFLANQKNT IKYDFALYRLGQSKEIDKFK 420 cj1486c 1 out 1 73 9 9 14.81 32 MMENNNRCVFSLSGVTGMLI VQSVKMFGSKEQDHRSIKEA 421 cj1489c 1 out 1 221 0 5 0.89 27 MFSWLEKNPFFFAVAVFVVI AFAKGEIKEIVALIAYLNSL 422 cj1637c 1 out 1 328 9 4 16.31 31 MDFFFVEYRDPLVGLIILTI PVCYEFNTCKIIYEVKNNET 423 cj1671c 1 unk 1 67 0 9 0.00 18 MIFWAFLVVIGAIYFGNMFF EQNAKAQKDYFELKGLYPNE 424 cj1714 1 out 1 32 9 9 33.33 23 MTMLDIFEIIFITTVVIIGF ITTVVIIGFGGIVFVVTKEK