Transmembrane helices for camje (Campylobacter jejuni)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Campylobacter jejuni

taxonomy: Bacteria; Proteobacteria; epsilon subdivision; Campylobacter group; Campylobacter
Campylobacter jejuni is a slender, spiral-shaped gram-negative bacillus. It causes gastroenteritis in humans. It is the leading cause of food-borne gastroenteritis in developed countries such as the UK and the USA.
The total number of ORF of Campylobacter jejuni used in this study is 1731.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	108	56	44	6.2	3.2	2.5	24.5	14.0	10.1
2	77	46	31	4.4	2.7	1.8	18.3	10.7	7.5
3	30	14	16	1.7	0.8	0.9	13.8	8.1	5.7
4	40	30	10	2.3	1.7	0.6	12.1	7.3	4.8
5	21	9	12	1.2	0.5	0.7	9.8	5.5	4.2
6	33	23	10	1.9	1.3	0.6	8.5	5.0	3.5
7	23	14	9	1.3	0.8	0.5	6.6	3.7	2.9
8	17	10	7	1.0	0.6	0.4	5.3	2.9	2.4
9	10	4	6	0.6	0.2	0.3	4.3	2.3	2.0
10	17	11	6	1.0	0.6	0.3	3.8	2.1	1.7
11	21	9	12	1.2	0.5	0.7	2.8	1.4	1.3
12	13	11	2	0.8	0.6	0.1	1.6	0.9	0.6
13	7	3	4	0.4	0.2	0.2	0.8	0.3	0.5
14	3	0	3	0.2	0.0	0.2	0.4	0.1	0.3
15	3	1	2	0.2	0.1	0.1	0.2	0.1	0.1
17	1	1	0	0.1	0.1	0.0	0.1	0.1	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Feb 7, 2000 Contact CUBIC WWW administrator:
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