Transmembrane helices for caeel (C. elegans)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

You can get:

Description of C. elegans

taxonomy: Eukaryota; Metazoa; Nematoda; Secernentea; Rhabditia; Rhabditida; Rhabditina; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
C. elegans is a free-living nematode. It is about as primitive an organism that exists which nonetheless shares many of the essential biological characteristics that are central problems of human biology. All 959 somatic cells of its transparent body are visible with a microscope, and its average life span is a mere 2-3 weeks. It provides the researcher with the ideal compromise between complexity and tractability.
The total number of ORF of C. elegans used in this study is 18944.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	1295	471	785	6.8	2.5	4.1	30.6	13.7	16.7
2	878	509	365	4.6	2.7	1.9	23.8	11.2	12.5
3	493	236	257	2.6	1.2	1.4	19.1	8.5	10.6
4	447	243	204	2.4	1.3	1.1	16.5	7.3	9.3
5	337	153	184	1.8	0.8	1.0	14.2	6.0	8.2
6	461	259	202	2.4	1.4	1.1	12.4	5.2	7.2
7	739	100	639	3.9	0.5	3.4	10.0	3.8	6.1
8	474	272	202	2.5	1.4	1.1	6.0	3.3	2.8
9	234	110	124	1.2	0.6	0.7	3.5	1.8	1.7
10	153	92	61	0.8	0.5	0.3	2.3	1.3	1.1
11	133	56	77	0.7	0.3	0.4	1.5	0.8	0.7
12	83	62	21	0.4	0.3	0.1	0.8	0.5	0.3
13	26	9	17	0.1	0.0	0.1	0.4	0.2	0.2
14	15	7	8	0.1	0.0	0.0	0.2	0.1	0.1
15	7	3	4	0.0	0.0	0.0	0.1	0.1	0.1
16	4	2	2	0.0	0.0	0.0	0.1	0.1	0.1
17	6	4	2	0.0	0.0	0.0	0.1	0.0	0.0
18	2	1	1	0.0	0.0	0.0	0.1	0.0	0.0
19	3	1	2	0.0	0.0	0.0	0.0	0.0	0.0
20	3	2	1	0.0	0.0	0.0	0.0	0.0	0.0
21	3	0	3	0.0	0.0	0.0	0.0	0.0	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Aug 19, 2000 Contact CUBIC WWW administrator:
cubic@cubic.bioc.columbia.edu