--- -------------------------------------------------------------------------------- --- --- All proteins with at least 7 transmembrane helices in Borrelia burgdorferi --- -------------------------------------------------------------------------------- --- --- contact: cubic@dodo.bioc.columbia.edu --- www page: http://dodo.bioc.columbia.edu/ --- --- note: all use of this data MUST quote the origin! --- --- -------------------------------------------------------------------------------- --- num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN seqC 24 BB0302 9 in 14 364 2 2 -2.85 30,67,93,125,160,197,289,322,351 MVVEINSLRTCYLLVLLLLV IIVTMALSGLISNVSKNLSN 25 BB0119 9 in 3 312 5 0 -5.11 58,84,109,136,171,202,251,273,312 MFCGLNIMTLDIVRIWNVSN GALDSIDSFLLTGPIFYLYL 26 BB0678 9 in 3 383 1 1 -1.09 37,62,84,125,166,241,289,329,365 MTISKNVFSKFILKFLNSSA YFLNKIVLKGVKRVKYNNIL 27 BB0629 8 in 21 626 1 0 -1.31 318,358,399,438,473,515,576,611 MIIMQNLFSKNLIVLNYNAT GSIITAVLIGILKKEYKNIN 28 BB0408 8 in 20 625 1 0 -1.16 315,355,393,431,476,514,575,612 MFFNFLKKDLVFVLPEVNSK GVAVATALVIFLKSLKLKES 29 BB0641 8 in 6 269 9 3 -9.93 27,78,109,131,157,207,229,258 MVLKKLILIIYSIFLLTFSI MLVILIFNLIIIKLMRKNNG 30 BB0072 8 in 1 773 4 0 -4.16 441,468,518,540,606,646,685,726 MLDLEKVKTIFKKYNKYEIN KTNKEKALKTPLENEKDIIK 31 BB0317 8 in 1 310 1 3 -1.39 27,51,94,123,179,234,263,305 MIFFRNSFMALIFSFSILSI IGLCQSIAIFISLFLIKARK 32 BB0808 8 in 1 355 9 1 -13.53 32,56,79,120,254,293,317,346 MKIDKLFIKSIILTFLSMNL SSFTTIFFLIINFFVYRIVR 33 BB0219 8 out 2 273 7 2 7.17 37,71,100,142,178,201,230,272 MIKSILDYLLTLHPVLLGLL VPSIFGVIGFTLMMFLDVSL 34 BB0273 8 out 2 269 2 4 2.04 40,69,98,120,150,192,240,262 MYYWDEILNLNFLVLKSFTI VIELSLDSLASFLKLFSRVL 35 BB0006 8 out 1 374 0 2 0.53 57,102,177,241,270,292,336,358 MIKAVKKRKEGNMLKDLNTN FLGGSEILSNISHISSKDKE 36 BB0574 8 out 1 283 0 2 0.64 45,71,99,122,172,200,240,271 MFSLKRFLNLFYFDFIYNKK LAMFNYYYLTKGSLYCFVNY 37 BB0759 8 out 1 285 0 4 0.28 36,71,99,135,185,215,243,272 MLNIYIKGILLGIANIIPGV SLGTSFILGIFINKKLAEKY 38 BB0216 7 in 9 302 1 1 -1.11 45,101,139,174,224,246,290 MHLSLKTKRKIIEIIFKSFI SIITNLLKNFILSSNKGLKK 39 BB0640 7 in 7 263 5 1 -5.30 27,82,120,145,196,218,247 MFRAFKNIFLFLILSFIYLP SLLFIINKFIGIKKLTTDAE 40 BB0539 7 in 4 232 4 2 -4.32 44,68,107,129,159,181,224 MIDLTQEKQEILIKNKFLAK YLDFINLFLYLLRFLGQRRN 41 BB0117 7 in 3 233 3 6 -3.47 51,75,115,139,168,192,227 MLRENKLKNYSLSDVNTSKI ILIIIASASHFWLMLKYISN 42 BB0354 7 in 2 346 5 3 -5.82 55,84,107,134,263,292,326 MKRLKRRLKIFWSITKRLKV GFVSEYIKISKDLDNNLYKG 43 BB0412 7 in 2 259 6 6 -6.16 30,70,100,132,161,205,243 MKSIFAKLNASINLFLFIIF PISIGIPIYLKKSGKIFFYW 44 BB0592 7 in 1 237 9 2 -14.79 32,65,105,127,161,193,227 MQLLKNKYPFKRALLDLFLV YVIFIHSFYNIIVSSLLLFL 45 BB0747 7 in 1 326 1 2 -1.98 27,148,185,210,265,287,313 MKIFIFKNTIYLLINLICAS IPNIITDILIYKINPYKDTL 46 BB0145 7 out 5 299 9 2 11.43 40,69,112,155,177,229,268 MTKDFFILKIDNFFDFLVDN TDHYGGKKENKFKRFLEIYN 47 BB0217 7 out 4 328 0 0 0.64 93,140,174,199,256,278,318 MSVLISKKTLTKNENEIINT IMVLIINLTSKFLINKLYRI 48 BB0118 7 out 3 437 0 2 -0.26 28,65,126,347,377,400,425 MEEIMYILFSVLALSFIIFI GLFLFGLGLFNDLKGLLNIF 49 BB0199 7 out 2 754 1 0 1.82 324,364,404,445,475,503,540 MTINILLLLLLLSSTGPTIV LEYFKLKDDKEIENLKNLKL 50 BB0362 7 out 2 328 9 2 17.82 38,76,124,159,235,258,308 MPNYINYPSWLHPEVIQGIP IVTKKIADKKIKNNTNLAYK 51 BB0679 7 out 2 311 3 3 3.79 32,70,113,165,215,253,295 MLSVSNIIIFLISETLINSQ LIFFSKKNYAPKFLGITYKK 52 BB0091 7 out 1 608 7 1 7.27 338,371,422,457,483,533,574 MIVKMKKVLLLTLSKYKKES SNHLGQEWSGCAYRPFKKMK 53 BB0237 7 out 1 521 2 0 2.34 45,72,95,139,167,202,501 MKTRCFCLAAFSGILTTLAI RFQFMEDKNQLLSSSVVKIK 54 BB0316 7 out 1 268 4 2 4.45 24,54,99,136,191,225,260 MFSIFEQAIVFSYLALGVLY QFYVAIIINILVSLIKRKDR