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Transmembrane helices for borbu (Borrelia burgdorferi)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

177 BB0769 1 in 15 |ali|phd|phdHtm| 346 5 3 -5.80 99 MKVLGIETSCDDCCVAVVEN

178 BB0262 1 in 9 |ali|phd|phdHtm| 417 9 4 -16.00 126 MIIPKKKQRVEKRKKNFLFN

179 BB0732 1 in 8 |ali|phd|phdHtm| 932 6 1 -6.31 34 MKLNSPNLKKINTHKLLIYL

180 BB0031 1 in 7 |ali|phd|phdHtm| 326 9 4 -13.60 63 MYLRRLDKFASFLVHIVEKY

181 BB0280 1 in 5 |ali|phd|phdHtm| 260 9 4 -22.36 40 MALRIKKPSKCDEGSPDYML

182 BB0770 1 in 4 |ali|phd|phdHtm| 293 7 5 -7.27 31 MFVFYIKKNKFIIVIFIIIS

183 BB0048 1 in 3 |ali|phd|phdHtm| 56 5 9 -5.71 41 MLNKILDKLVEAYSIIFRTR

184 BB0263 1 in 3 |ali|phd|phdHtm| 168 9 8 -11.73 29 MRIFKAHKYELASILAACLF

185 BB0279 1 in 3 |ali|phd|phdHtm| 178 4 8 -4.72 48 MPNKDDDNLDMGDSNVSRKG

186 BB0106 1 in 2 |ali|phd|phdHtm| 569 9 2 -10.73 40 MVYLMLCLKIWRVVLKKNKT

187 BB0150 1 in 2 |ali|phd|phdHtm| 30 9 9 -11.17 28 MFGCLRIHVFKIYFIFLIIH

188 BB0395 1 in 2 |ali|phd|phdHtm| 56 9 9 -14.97 51 MFRFIKDSILELKKVTWPKY

189 BB0718 1 in 2 |ali|phd|phdHtm| 599 9 2 -11.00 28 MGVITNFRYKFGIFFLIVIM

190 BB0750 1 in 2 |ali|phd|phdHtm| 47 9 9 -11.60 45 MFDINFNLKDISVKPNNILS

191 BB0082 1 in 1 |ali|phd|phdHtm| 432 9 3 -16.00 162 MNSSKTSEDRIKIYLSKLKK

192 BB0100 1 in 1 |ali|phd|phdHtm| 261 1 4 -2.00 86 MKNFKEVIIIFDSGIGGLSY

193 BB0126 1 in 1 |ali|phd|phdHtm| 203 2 7 -2.29 25 MAKNNLLVFFIAIIFVFVSI

194 BB0185 1 in 1 |ali|phd|phdHtm| 217 4 6 -4.00 93 MVNTLAFEYSYKALIVYCRI

195 BB0326 1 in 1 |ali|phd|phdHtm| 931 4 1 -4.00 354 MPDVDKIIQFKREILDNLSN

196 BB0381 1 in 1 |ali|phd|phdHtm| 475 9 2 -12.00 395 MNKKMFPKIYYYDQDFIDIY

197 BB0441 1 in 1 |ali|phd|phdHtm| 119 9 9 -17.82 97 MRKRNISLKSKIEIQKIFKE

198 BB0617 1 in 1 |ali|phd|phdHtm| 122 2 9 -2.45 77 MRQADFFVKKCKKIILNNND

199 BB0625 1 in 1 |ali|phd|phdHtm| 697 9 2 -10.22 36 MITLFKILALRKSKTFCILQ

200 BB0654 1 in 1 |ali|phd|phdHtm| 380 9 4 -24.00 259 MKFFDFGSLGFYRFFDFQKY

201 BB0661 1 in 1 |ali|phd|phdHtm| 123 9 9 -24.00 118 MRNFRLAKVNFEVFCEQCGE

202 BB0709 1 in 1 |ali|phd|phdHtm| 343 4 5 -5.00 30 MLIKIGKVFILFFFLGSILS

203 BB0751 1 in 1 |ali|phd|phdHtm| 357 8 3 -8.24 51 MDLLDLLEKEKQINKNKGVF

204 BB0783 1 in 1 |ali|phd|phdHtm| 394 9 3 -21.33 24 MRKDLIFLFLIVLIIASVVI

205 BB0846 1 in 1 |ali|phd|phdHtm| 37 6 9 -6.25 34 MVIKNSNQHDPPYNFSNPIA

206 BB0016 1 out 9 |ali|phd|phdHtm| 125 9 9 13.24 22 MAMNYARFAVLIVLLFFYIW

207 BB0745 1 unk 9 |ali|phd|phdHtm| 222 0 6 0.00 18 MYIFYFCFVFIMFYNFFMIN

208 BB0651 1 out 6 |ali|phd|phdHtm| 105 9 9 24.38 39 MYSMGGFVFLLQEFSGNSSF

209 BB0204 1 out 5 |ali|phd|phdHtm| 323 2 6 2.71 32 MKFIINLLLSTIKIITFTVI

210 BB0506 1 out 5 |ali|phd|phdHtm| 263 0 4 0.16 167 MKGFRNNLLNILCKRYPEKT

211 BB0203 1 out 4 |ali|phd|phdHtm| 311 2 4 2.09 35 MFDIKQIFNKTYEYLIIIIT

212 BB0474 1 unk 4 |ali|phd|phdHtm| 33 0 9 0.00 26 MAYLFLINLMFLALKIDFRF

213 BB0052 1 out 3 |ali|phd|phdHtm| 218 9 5 12.20 173 MDDDVLKRIGVLSKFITDEK

214 BB0331 1 out 3 |ali|phd|phdHtm| 51 0 9 -0.76 36 MSNLIFNKMYFLFLIFYLKF

215 BB0504 1 unk 3 |ali|phd|phdHtm| 510 0 2 0.00 21 MIYIIFSSIFAGFILGFLVR

216 BB0692 1 unk 3 |ali|phd|phdHtm| 37 0 9 0.00 28 MVFKAKWLFLYLLFLNPINF

217 BB0286 1 out 2 |ali|phd|phdHtm| 207 0 8 -0.67 34 MKVNNFLSFFFRAFFLLFLI

218 BB0635 1 out 2 |ali|phd|phdHtm| 481 9 2 14.68 134 MKNLSLFTDFYEISMMNAYF

219 BB0748 1 out 2 |ali|phd|phdHtm| 152 9 9 10.40 133 MTIYKKIAMSFYSGILSYFI

220 BB0260 1 out 1 |ali|phd|phdHtm| 337 9 4 18.67 307 MKGFLAIKLSNNEYYPVLNL

221 BB0261 1 out 1 |ali|phd|phdHtm| 460 9 3 36.00 25 MLSLFIVISSLTVFILVFLF

222 BB0310 1 unk 1 |ali|phd|phdHtm| 45 0 9 0.00 21 MFFLIKIFLGCCLNVWFNLI

223 BB0320 1 out 1 |ali|phd|phdHtm| 35 8 9 8.33 31 MRSSVDRIINFLISFGGFIF

224 BB0542 1 out 1 |ali|phd|phdHtm| 192 5 6 5.50 34 MDNLNSINSIKDLSKFFMYK

225 BB0546 1 out 1 |ali|phd|phdHtm| 286 0 5 0.89 36 MKDLNENNDNNKGFFVALTS

226 BB0555 1 out 1 |ali|phd|phdHtm| 155 7 8 7.23 65 MTLINFNLNGESISKKISLS

227 BB0664 1 out 1 |ali|phd|phdHtm| 227 9 5 24.31 31 MLHNTMLIARIMNINTLFYG

228 BB0665 1 out 1 |ali|phd|phdHtm| 319 0 4 0.00 269 MRLPGSGYSYTVIQSKNNYS

229 BB0667 1 out 1 |ali|phd|phdHtm| 183 1 7 1.25 50 MKNNISDIFFKYNVVIYKFL

230 BB0687 1 out 1 |ali|phd|phdHtm| 317 3 4 4.00 128 MDLISFSVPGNLLLMGEYTI

231 BB0794 1 out 1 |ali|phd|phdHtm| 1465 5 1 5.71 33 MNLLFLRSKTFILLILPFFI

232 BB0796 1 out 1 |ali|phd|phdHtm| 185 2 6 2.44 27 MINAMEKFVFFLILPLFFLL

233 BB0817 1 out 1 |ali|phd|phdHtm| 468 6 2 6.00 298 MKVDFDDLNNIFFVGIKGSG

234 BB0848 1 unk 1 |ali|phd|phdHtm| 34 0 9 0.00 24 MYFCIIDLEFVGVLPYFFIY

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
177	BB0769	1	in	15	\|ali\|phd\|phdHtm\|	346	5	3	-5.80	99	MKVLGIETSCDDCCVAVVEN
178	BB0262	1	in	9	\|ali\|phd\|phdHtm\|	417	9	4	-16.00	126	MIIPKKKQRVEKRKKNFLFN
179	BB0732	1	in	8	\|ali\|phd\|phdHtm\|	932	6	1	-6.31	34	MKLNSPNLKKINTHKLLIYL
180	BB0031	1	in	7	\|ali\|phd\|phdHtm\|	326	9	4	-13.60	63	MYLRRLDKFASFLVHIVEKY
181	BB0280	1	in	5	\|ali\|phd\|phdHtm\|	260	9	4	-22.36	40	MALRIKKPSKCDEGSPDYML
182	BB0770	1	in	4	\|ali\|phd\|phdHtm\|	293	7	5	-7.27	31	MFVFYIKKNKFIIVIFIIIS
183	BB0048	1	in	3	\|ali\|phd\|phdHtm\|	56	5	9	-5.71	41	MLNKILDKLVEAYSIIFRTR
184	BB0263	1	in	3	\|ali\|phd\|phdHtm\|	168	9	8	-11.73	29	MRIFKAHKYELASILAACLF
185	BB0279	1	in	3	\|ali\|phd\|phdHtm\|	178	4	8	-4.72	48	MPNKDDDNLDMGDSNVSRKG
186	BB0106	1	in	2	\|ali\|phd\|phdHtm\|	569	9	2	-10.73	40	MVYLMLCLKIWRVVLKKNKT
187	BB0150	1	in	2	\|ali\|phd\|phdHtm\|	30	9	9	-11.17	28	MFGCLRIHVFKIYFIFLIIH
188	BB0395	1	in	2	\|ali\|phd\|phdHtm\|	56	9	9	-14.97	51	MFRFIKDSILELKKVTWPKY
189	BB0718	1	in	2	\|ali\|phd\|phdHtm\|	599	9	2	-11.00	28	MGVITNFRYKFGIFFLIVIM
190	BB0750	1	in	2	\|ali\|phd\|phdHtm\|	47	9	9	-11.60	45	MFDINFNLKDISVKPNNILS
191	BB0082	1	in	1	\|ali\|phd\|phdHtm\|	432	9	3	-16.00	162	MNSSKTSEDRIKIYLSKLKK
192	BB0100	1	in	1	\|ali\|phd\|phdHtm\|	261	1	4	-2.00	86	MKNFKEVIIIFDSGIGGLSY
193	BB0126	1	in	1	\|ali\|phd\|phdHtm\|	203	2	7	-2.29	25	MAKNNLLVFFIAIIFVFVSI
194	BB0185	1	in	1	\|ali\|phd\|phdHtm\|	217	4	6	-4.00	93	MVNTLAFEYSYKALIVYCRI
195	BB0326	1	in	1	\|ali\|phd\|phdHtm\|	931	4	1	-4.00	354	MPDVDKIIQFKREILDNLSN
196	BB0381	1	in	1	\|ali\|phd\|phdHtm\|	475	9	2	-12.00	395	MNKKMFPKIYYYDQDFIDIY
197	BB0441	1	in	1	\|ali\|phd\|phdHtm\|	119	9	9	-17.82	97	MRKRNISLKSKIEIQKIFKE
198	BB0617	1	in	1	\|ali\|phd\|phdHtm\|	122	2	9	-2.45	77	MRQADFFVKKCKKIILNNND
199	BB0625	1	in	1	\|ali\|phd\|phdHtm\|	697	9	2	-10.22	36	MITLFKILALRKSKTFCILQ
200	BB0654	1	in	1	\|ali\|phd\|phdHtm\|	380	9	4	-24.00	259	MKFFDFGSLGFYRFFDFQKY
201	BB0661	1	in	1	\|ali\|phd\|phdHtm\|	123	9	9	-24.00	118	MRNFRLAKVNFEVFCEQCGE
202	BB0709	1	in	1	\|ali\|phd\|phdHtm\|	343	4	5	-5.00	30	MLIKIGKVFILFFFLGSILS
203	BB0751	1	in	1	\|ali\|phd\|phdHtm\|	357	8	3	-8.24	51	MDLLDLLEKEKQINKNKGVF
204	BB0783	1	in	1	\|ali\|phd\|phdHtm\|	394	9	3	-21.33	24	MRKDLIFLFLIVLIIASVVI
205	BB0846	1	in	1	\|ali\|phd\|phdHtm\|	37	6	9	-6.25	34	MVIKNSNQHDPPYNFSNPIA
206	BB0016	1	out	9	\|ali\|phd\|phdHtm\|	125	9	9	13.24	22	MAMNYARFAVLIVLLFFYIW
207	BB0745	1	unk	9	\|ali\|phd\|phdHtm\|	222	0	6	0.00	18	MYIFYFCFVFIMFYNFFMIN
208	BB0651	1	out	6	\|ali\|phd\|phdHtm\|	105	9	9	24.38	39	MYSMGGFVFLLQEFSGNSSF
209	BB0204	1	out	5	\|ali\|phd\|phdHtm\|	323	2	6	2.71	32	MKFIINLLLSTIKIITFTVI
210	BB0506	1	out	5	\|ali\|phd\|phdHtm\|	263	0	4	0.16	167	MKGFRNNLLNILCKRYPEKT
211	BB0203	1	out	4	\|ali\|phd\|phdHtm\|	311	2	4	2.09	35	MFDIKQIFNKTYEYLIIIIT
212	BB0474	1	unk	4	\|ali\|phd\|phdHtm\|	33	0	9	0.00	26	MAYLFLINLMFLALKIDFRF
213	BB0052	1	out	3	\|ali\|phd\|phdHtm\|	218	9	5	12.20	173	MDDDVLKRIGVLSKFITDEK
214	BB0331	1	out	3	\|ali\|phd\|phdHtm\|	51	0	9	-0.76	36	MSNLIFNKMYFLFLIFYLKF
215	BB0504	1	unk	3	\|ali\|phd\|phdHtm\|	510	0	2	0.00	21	MIYIIFSSIFAGFILGFLVR
216	BB0692	1	unk	3	\|ali\|phd\|phdHtm\|	37	0	9	0.00	28	MVFKAKWLFLYLLFLNPINF
217	BB0286	1	out	2	\|ali\|phd\|phdHtm\|	207	0	8	-0.67	34	MKVNNFLSFFFRAFFLLFLI
218	BB0635	1	out	2	\|ali\|phd\|phdHtm\|	481	9	2	14.68	134	MKNLSLFTDFYEISMMNAYF
219	BB0748	1	out	2	\|ali\|phd\|phdHtm\|	152	9	9	10.40	133	MTIYKKIAMSFYSGILSYFI
220	BB0260	1	out	1	\|ali\|phd\|phdHtm\|	337	9	4	18.67	307	MKGFLAIKLSNNEYYPVLNL
221	BB0261	1	out	1	\|ali\|phd\|phdHtm\|	460	9	3	36.00	25	MLSLFIVISSLTVFILVFLF
222	BB0310	1	unk	1	\|ali\|phd\|phdHtm\|	45	0	9	0.00	21	MFFLIKIFLGCCLNVWFNLI
223	BB0320	1	out	1	\|ali\|phd\|phdHtm\|	35	8	9	8.33	31	MRSSVDRIINFLISFGGFIF
224	BB0542	1	out	1	\|ali\|phd\|phdHtm\|	192	5	6	5.50	34	MDNLNSINSIKDLSKFFMYK
225	BB0546	1	out	1	\|ali\|phd\|phdHtm\|	286	0	5	0.89	36	MKDLNENNDNNKGFFVALTS
226	BB0555	1	out	1	\|ali\|phd\|phdHtm\|	155	7	8	7.23	65	MTLINFNLNGESISKKISLS
227	BB0664	1	out	1	\|ali\|phd\|phdHtm\|	227	9	5	24.31	31	MLHNTMLIARIMNINTLFYG
228	BB0665	1	out	1	\|ali\|phd\|phdHtm\|	319	0	4	0.00	269	MRLPGSGYSYTVIQSKNNYS
229	BB0667	1	out	1	\|ali\|phd\|phdHtm\|	183	1	7	1.25	50	MKNNISDIFFKYNVVIYKFL
230	BB0687	1	out	1	\|ali\|phd\|phdHtm\|	317	3	4	4.00	128	MDLISFSVPGNLLLMGEYTI
231	BB0794	1	out	1	\|ali\|phd\|phdHtm\|	1465	5	1	5.71	33	MNLLFLRSKTFILLILPFFI
232	BB0796	1	out	1	\|ali\|phd\|phdHtm\|	185	2	6	2.44	27	MINAMEKFVFFLILPLFFLL
233	BB0817	1	out	1	\|ali\|phd\|phdHtm\|	468	6	2	6.00	298	MKVDFDDLNNIFFVGIKGSG
234	BB0848	1	unk	1	\|ali\|phd\|phdHtm\|	34	0	9	0.00	24	MYFCIIDLEFVGVLPYFFIY

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