Transmembrane helices for borbu (Borrelia burgdorferi)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Borrelia burgdorferi

taxonomy: Bacteria; Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group
gram negative
The total number of ORF of Borrelia burgdorferi used in this study is 851.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	58	29	23	6.8	3.4	2.7	27.5	16.8	9.9
2	41	26	14	4.8	3.1	1.6	20.7	13.4	7.2
3	22	15	7	2.6	1.8	0.8	15.9	10.3	5.5
4	20	13	7	2.4	1.5	0.8	13.3	8.6	4.7
5	19	14	5	2.2	1.6	0.6	10.9	7.1	3.9
6	20	16	4	2.4	1.9	0.5	8.7	5.4	3.3
7	17	8	9	2.0	0.9	1.1	6.3	3.5	2.8
8	11	6	5	1.3	0.7	0.6	4.3	2.6	1.8
9	3	3	0	0.4	0.4	0.0	3.1	1.9	1.2
10	7	2	5	0.8	0.2	0.6	2.7	1.5	1.2
11	7	5	2	0.8	0.6	0.2	1.9	1.3	0.6
12	4	4	0	0.5	0.5	0.0	1.1	0.7	0.4
13	5	2	3	0.6	0.2	0.4	0.6	0.2	0.4

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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