Transmembrane helices for bacsu (Bacillus subtilis)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Bacillus subtilis

taxonomy: Bacteria; Firmicutes; Bacillus/Clostridium group; Bacillus/Staphylococcus group; Bacillus
The total number of ORF of Bacillus subtilis used in this study is 4100.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	172	96	72	4.2	2.3	1.8	24.3	15.3	9.0
2	147	105	41	3.6	2.6	1.0	20.1	12.9	7.2
3	86	39	47	2.1	1.0	1.1	16.6	10.4	6.2
4	85	62	23	2.1	1.5	0.6	14.5	9.4	5.0
5	88	44	44	2.1	1.1	1.1	12.4	7.9	4.5
6	93	68	25	2.3	1.7	0.6	10.2	6.8	3.4
7	33	16	17	0.8	0.4	0.4	8.0	5.2	2.8
8	36	25	11	0.9	0.6	0.3	7.2	4.8	2.4
9	49	28	21	1.2	0.7	0.5	6.3	4.2	2.1
10	40	34	6	1.0	0.8	0.1	5.1	3.5	1.6
11	53	23	30	1.3	0.6	0.7	4.1	2.7	1.5
12	76	64	12	1.9	1.6	0.3	2.8	2.1	0.7
13	26	11	15	0.6	0.3	0.4	1.0	0.5	0.4
14	13	11	2	0.3	0.3	0.0	0.3	0.3	0.1
16	1	0	1	0.0	0.0	0.0	0.0	0.0	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Nov 30, 1999 Contact CUBIC WWW administrator:
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