Transmembrane helices for arcfu (Archaeoglobus fulgidus)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

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Description of Archaeoglobus fulgidus

taxonomy: Archaea; Euryarchaeota; Archaeoglobales; Archaeoglobaceae; Archaeoglobus
Archaeoglobus fulgidus is the first sulphur-metabolizing organism to have its genome sequence determined. Archaeoglobus fulgidus VC-16 is the type strain of the Archaeoglobales. Cells are irregular spheres with a glycoprotein
envelope and monopolar flagella. Growth occurs between 60 and 95 degrees C, with optimum growth at 83 degrees C and a
minimum division time of 4 hours. The organism grows organoheterotrophically using a variety of carbon and energy
sources, but can grow lithoautotrophically on hydrogen, thiosulphate and carbon dioxide.
The total number of ORF of Archaeoglobus fulgidus used in this study is 2384.

	Number of proteins			Percentage of proteins in entire genome			Cumulative percentage of proteins in entire genome
Nhtm	all	top=in	top=out	all	top=in	top=out	all	top=in	top=out
1	94	35	55	3.9	1.5	2.3	19.0	9.9	9.0
2	72	46	26	3.0	1.9	1.1	15.1	8.4	6.7
3	49	21	28	2.1	0.9	1.2	12.1	6.5	5.6
4	26	16	10	1.1	0.7	0.4	10.0	5.6	4.4
5	35	12	23	1.5	0.5	1.0	8.9	4.9	4.0
6	36	22	14	1.5	0.9	0.6	7.5	4.4	3.1
7	35	20	15	1.5	0.8	0.6	6.0	3.5	2.5
8	18	10	8	0.8	0.4	0.3	4.5	2.6	1.8
9	23	13	10	1.0	0.5	0.4	3.7	2.2	1.5
10	23	14	9	1.0	0.6	0.4	2.8	1.7	1.1
11	15	5	10	0.6	0.2	0.4	1.8	1.1	0.7
12	13	12	1	0.5	0.5	0.0	1.2	0.9	0.3
13	10	6	4	0.4	0.3	0.2	0.6	0.4	0.3
14	1	1	0	0.0	0.0	0.0	0.2	0.1	0.1
15	2	1	1	0.1	0.0	0.0	0.2	0.1	0.1
17	2	1	1	0.1	0.0	0.0	0.1	0.0	0.0

nHTM HTML ASCII

at least 10 HTMs HTML ASCII

7--9 HTMs HTML ASCII

4--6 HTMs HTML ASCII

3 HTMs HTML ASCII

2 HTMs HTML ASCII

1 HTM HTML ASCII

Last update: Dec 1, 1999 Contact CUBIC WWW administrator:
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