Bottom - Previous - Next - CUBIC - PP home

Transmembrane helices for aquae (Aquifex aeolicus)

Jinfeng Liu & Burkhard Rost

CUBIC Columbia Univ, Dept Biochem & Mol Biophysics

num id nhtm top nali ali|phd|phdHtm len1 riTop riMod topD htmCN seqN

226 2982907 1 in 86 |ali|phd|phdHtm| 476 2 2 -2.08 167 MIEKKMLIGGEWVDKEEKIE

227 2983828 1 in 33 |ali|phd|phdHtm| 120 0 9 -0.87 39 MSQVTQSFRKSLSLNKGFTL

228 2983533 1 in 18 |ali|phd|phdHtm| 303 3 4 -3.49 285 MSTLTTGGTVGLGIKRLSAS

229 2984114 1 in 17 |ali|phd|phdHtm| 132 1 9 -1.24 37 MIIVRSMEEKEISSMNVIPL

230 2983364 1 in 16 |ali|phd|phdHtm| 335 3 3 -3.52 100 MRTLAVETSCDETALAIYDD

231 2983462 1 in 16 |ali|phd|phdHtm| 256 8 4 -8.92 23 MRKQIVELFLIILAVLFIRE

232 2984316 1 in 15 |ali|phd|phdHtm| 510 4 2 -4.80 164 MAEEKSEVLLKIQEKYYPPK

233 2983827 1 in 10 |ali|phd|phdHtm| 119 4 9 -4.22 29 MPKEGGFTLVEVLVALMIVL

234 2983183 1 in 6 |ali|phd|phdHtm| 578 9 2 -11.79 37 MEYLRVYQKRERVFKRRVIL

235 2983507 1 in 6 |ali|phd|phdHtm| 235 9 5 -17.50 38 MAYKKKEECPKPPAWLTSFG

236 2983555 1 in 4 |ali|phd|phdHtm| 374 9 3 -16.57 25 MKKYIGVFTVVALIVGFGIY

237 2983829 1 in 4 |ali|phd|phdHtm| 145 1 8 -1.12 29 MIVLFKRGFTLVELLIVIGI

238 2984234 1 in 4 |ali|phd|phdHtm| 133 9 9 -9.35 39 MNLRKRLRFREEERAYIDVV

239 2983518 1 in 3 |ali|phd|phdHtm| 452 3 2 -3.00 154 MKSLLRQIPQISKVVEIFKK

240 2983830 1 in 3 |ali|phd|phdHtm| 143 9 9 -20.00 58 MGKLLYFKRWNVVQGYSKQG

241 2984335 1 in 3 |ali|phd|phdHtm| 173 4 8 -4.79 37 MERKLSQRAGNTFKGFTLVE

242 2983109 1 in 2 |ali|phd|phdHtm| 170 9 8 -14.04 28 MLRKYFWLPVIIGLFAGLFA

243 2983508 1 in 2 |ali|phd|phdHtm| 224 9 6 -15.54 38 MAYKKKEECPKPPAWLTSFS

244 2984103 1 in 2 |ali|phd|phdHtm| 162 6 9 -6.68 23 MRALIAFLIGAVIALSIFYF

245 2983073 1 in 1 |ali|phd|phdHtm| 272 5 4 -5.47 234 MSERQNTGGFKAASLDEALI

246 2983174 1 in 1 |ali|phd|phdHtm| 216 0 5 -0.67 24 MRGILGLVFGSVILIYLISL

247 2983223 1 in 1 |ali|phd|phdHtm| 437 9 2 -19.27 29 MFGLIQKHKRIAVIIVTLAS

248 2983226 1 in 1 |ali|phd|phdHtm| 278 9 4 -17.33 24 MKKFLIILLSFVLFVFPEDL

249 2983278 1 in 1 |ali|phd|phdHtm| 374 9 3 -16.57 25 MKTLIKYMVFLVIPIVLIIM

250 2983391 1 in 1 |ali|phd|phdHtm| 392 8 3 -8.00 219 MEIVQEGIAKIIVPEIPKTV

251 2983564 1 in 1 |ali|phd|phdHtm| 416 9 2 -20.00 138 MRFSIRNVSEQEVKREIRHI

252 2983810 1 in 1 |ali|phd|phdHtm| 321 3 6 -3.67 309 MTQWKRRSRRKGMRTRNNKQ

253 2983994 1 in 1 |ali|phd|phdHtm| 321 3 6 -3.67 309 MTQWKRRSRRKGMRTRNNKQ

254 2984212 1 in 1 |ali|phd|phdHtm| 160 7 8 -7.00 26 MVIGRKAGIIIYVMHALLLL

255 2984258 1 in 1 |ali|phd|phdHtm| 223 9 6 -10.00 101 MPELQGKPLRFYLLRLTTTL

256 2984273 1 in 1 |ali|phd|phdHtm| 392 1 3 -2.00 264 MDLLYRHPILDGRKELFGFE

257 2984314 1 in 1 |ali|phd|phdHtm| 368 4 3 -4.00 290 MFKVLNVVDGIGWCGTKEQT

258 2982855 1 out 13 |ali|phd|phdHtm| 217 1 5 1.44 126 MKFFLDTANVEEIKKAMEWG

259 2983432 1 out 13 |ali|phd|phdHtm| 253 9 5 12.20 23 MEFLPLPPIFIAILVLLFLA

260 2983159 1 out 10 |ali|phd|phdHtm| 178 9 7 19.21 63 MNTYATAPAIKITRVSSITL

261 2983426 1 out 10 |ali|phd|phdHtm| 265 2 4 2.32 138 MSVRVVVCGALGRMGRRIIE

262 2984050 1 out 9 |ali|phd|phdHtm| 482 2 2 2.16 307 MGSNPTPSASVLYMDLSFIL

263 2983375 1 out 8 |ali|phd|phdHtm| 445 8 2 8.04 287 MQITSQTLAKILKGSLVGSP

264 2983572 1 out 8 |ali|phd|phdHtm| 309 6 3 6.72 122 MGTKIIGTGVYLPKNVLTNF

265 2983354 1 out 6 |ali|phd|phdHtm| 328 1 3 1.84 204 MKKVNVVAIGGGTGLSSLLR

266 2983647 1 out 5 |ali|phd|phdHtm| 457 9 2 13.36 336 MLRAEWVEKRKRFKNKTQMH

267 2983702 1 out 4 |ali|phd|phdHtm| 102 9 9 27.20 28 MEQQSPVGALLFQIIFLVAI

268 2983625 1 out 3 |ali|phd|phdHtm| 344 5 3 5.00 269 MIAVSGGGTGGHFFPALAFT

269 2983353 1 unk 2 |ali|phd|phdHtm| 326 0 4 0.00 21 MRRFLILLYVFLVSSVLGFI

270 2983834 1 unk 2 |ali|phd|phdHtm| 584 0 2 0.00 19 MFALILAFLIMFLSFLPFHL

271 2983867 1 out 2 |ali|phd|phdHtm| 262 9 5 16.00 24 MYLVYALSLAFTLSVFLSVF

272 2983901 1 out 2 |ali|phd|phdHtm| 300 3 4 3.67 30 MHTVIEGRVNYILVGLFILL

273 2982807 1 out 1 |ali|phd|phdHtm| 205 8 6 8.00 23 MNTEIIVLFIIHFIMINENV

274 2983143 1 out 1 |ali|phd|phdHtm| 253 1 5 1.13 64 MQISLSFTSSSIPGRQKLGT

275 2983193 1 out 1 |ali|phd|phdHtm| 267 9 5 14.44 46 MSSFASFLDMWRDLDKYLSS

276 2983581 1 out 1 |ali|phd|phdHtm| 350 8 3 8.00 259 METTIFQFQKTFFTKPPKER

277 2983697 1 unk 1 |ali|phd|phdHtm| 288 0 5 0.00 20 MILILLFLLINFLFAERVFY

278 2983716 1 unk 1 |ali|phd|phdHtm| 281 0 4 0.00 18 MILVLVLGIILTLSFYAADL

279 2983837 1 out 1 |ali|phd|phdHtm| 276 6 4 6.44 27 MNRGMTLIELLVALALSIIL

280 2984186 1 out 1 |ali|phd|phdHtm| 345 9 4 24.31 44 MEAQAGFDTFIEATRYLFRG

281 2984352 1 out 1 |ali|phd|phdHtm| 216 6 7 6.05 60 MANKRKEFIKLNLNKERKAF

num	id	nhtm	top	nali	ali\|phd\|phdHtm	len1	riTop	riMod	topD	htmCN	seqN
226	2982907	1	in	86	\|ali\|phd\|phdHtm\|	476	2	2	-2.08	167	MIEKKMLIGGEWVDKEEKIE
227	2983828	1	in	33	\|ali\|phd\|phdHtm\|	120	0	9	-0.87	39	MSQVTQSFRKSLSLNKGFTL
228	2983533	1	in	18	\|ali\|phd\|phdHtm\|	303	3	4	-3.49	285	MSTLTTGGTVGLGIKRLSAS
229	2984114	1	in	17	\|ali\|phd\|phdHtm\|	132	1	9	-1.24	37	MIIVRSMEEKEISSMNVIPL
230	2983364	1	in	16	\|ali\|phd\|phdHtm\|	335	3	3	-3.52	100	MRTLAVETSCDETALAIYDD
231	2983462	1	in	16	\|ali\|phd\|phdHtm\|	256	8	4	-8.92	23	MRKQIVELFLIILAVLFIRE
232	2984316	1	in	15	\|ali\|phd\|phdHtm\|	510	4	2	-4.80	164	MAEEKSEVLLKIQEKYYPPK
233	2983827	1	in	10	\|ali\|phd\|phdHtm\|	119	4	9	-4.22	29	MPKEGGFTLVEVLVALMIVL
234	2983183	1	in	6	\|ali\|phd\|phdHtm\|	578	9	2	-11.79	37	MEYLRVYQKRERVFKRRVIL
235	2983507	1	in	6	\|ali\|phd\|phdHtm\|	235	9	5	-17.50	38	MAYKKKEECPKPPAWLTSFG
236	2983555	1	in	4	\|ali\|phd\|phdHtm\|	374	9	3	-16.57	25	MKKYIGVFTVVALIVGFGIY
237	2983829	1	in	4	\|ali\|phd\|phdHtm\|	145	1	8	-1.12	29	MIVLFKRGFTLVELLIVIGI
238	2984234	1	in	4	\|ali\|phd\|phdHtm\|	133	9	9	-9.35	39	MNLRKRLRFREEERAYIDVV
239	2983518	1	in	3	\|ali\|phd\|phdHtm\|	452	3	2	-3.00	154	MKSLLRQIPQISKVVEIFKK
240	2983830	1	in	3	\|ali\|phd\|phdHtm\|	143	9	9	-20.00	58	MGKLLYFKRWNVVQGYSKQG
241	2984335	1	in	3	\|ali\|phd\|phdHtm\|	173	4	8	-4.79	37	MERKLSQRAGNTFKGFTLVE
242	2983109	1	in	2	\|ali\|phd\|phdHtm\|	170	9	8	-14.04	28	MLRKYFWLPVIIGLFAGLFA
243	2983508	1	in	2	\|ali\|phd\|phdHtm\|	224	9	6	-15.54	38	MAYKKKEECPKPPAWLTSFS
244	2984103	1	in	2	\|ali\|phd\|phdHtm\|	162	6	9	-6.68	23	MRALIAFLIGAVIALSIFYF
245	2983073	1	in	1	\|ali\|phd\|phdHtm\|	272	5	4	-5.47	234	MSERQNTGGFKAASLDEALI
246	2983174	1	in	1	\|ali\|phd\|phdHtm\|	216	0	5	-0.67	24	MRGILGLVFGSVILIYLISL
247	2983223	1	in	1	\|ali\|phd\|phdHtm\|	437	9	2	-19.27	29	MFGLIQKHKRIAVIIVTLAS
248	2983226	1	in	1	\|ali\|phd\|phdHtm\|	278	9	4	-17.33	24	MKKFLIILLSFVLFVFPEDL
249	2983278	1	in	1	\|ali\|phd\|phdHtm\|	374	9	3	-16.57	25	MKTLIKYMVFLVIPIVLIIM
250	2983391	1	in	1	\|ali\|phd\|phdHtm\|	392	8	3	-8.00	219	MEIVQEGIAKIIVPEIPKTV
251	2983564	1	in	1	\|ali\|phd\|phdHtm\|	416	9	2	-20.00	138	MRFSIRNVSEQEVKREIRHI
252	2983810	1	in	1	\|ali\|phd\|phdHtm\|	321	3	6	-3.67	309	MTQWKRRSRRKGMRTRNNKQ
253	2983994	1	in	1	\|ali\|phd\|phdHtm\|	321	3	6	-3.67	309	MTQWKRRSRRKGMRTRNNKQ
254	2984212	1	in	1	\|ali\|phd\|phdHtm\|	160	7	8	-7.00	26	MVIGRKAGIIIYVMHALLLL
255	2984258	1	in	1	\|ali\|phd\|phdHtm\|	223	9	6	-10.00	101	MPELQGKPLRFYLLRLTTTL
256	2984273	1	in	1	\|ali\|phd\|phdHtm\|	392	1	3	-2.00	264	MDLLYRHPILDGRKELFGFE
257	2984314	1	in	1	\|ali\|phd\|phdHtm\|	368	4	3	-4.00	290	MFKVLNVVDGIGWCGTKEQT
258	2982855	1	out	13	\|ali\|phd\|phdHtm\|	217	1	5	1.44	126	MKFFLDTANVEEIKKAMEWG
259	2983432	1	out	13	\|ali\|phd\|phdHtm\|	253	9	5	12.20	23	MEFLPLPPIFIAILVLLFLA
260	2983159	1	out	10	\|ali\|phd\|phdHtm\|	178	9	7	19.21	63	MNTYATAPAIKITRVSSITL
261	2983426	1	out	10	\|ali\|phd\|phdHtm\|	265	2	4	2.32	138	MSVRVVVCGALGRMGRRIIE
262	2984050	1	out	9	\|ali\|phd\|phdHtm\|	482	2	2	2.16	307	MGSNPTPSASVLYMDLSFIL
263	2983375	1	out	8	\|ali\|phd\|phdHtm\|	445	8	2	8.04	287	MQITSQTLAKILKGSLVGSP
264	2983572	1	out	8	\|ali\|phd\|phdHtm\|	309	6	3	6.72	122	MGTKIIGTGVYLPKNVLTNF
265	2983354	1	out	6	\|ali\|phd\|phdHtm\|	328	1	3	1.84	204	MKKVNVVAIGGGTGLSSLLR
266	2983647	1	out	5	\|ali\|phd\|phdHtm\|	457	9	2	13.36	336	MLRAEWVEKRKRFKNKTQMH
267	2983702	1	out	4	\|ali\|phd\|phdHtm\|	102	9	9	27.20	28	MEQQSPVGALLFQIIFLVAI
268	2983625	1	out	3	\|ali\|phd\|phdHtm\|	344	5	3	5.00	269	MIAVSGGGTGGHFFPALAFT
269	2983353	1	unk	2	\|ali\|phd\|phdHtm\|	326	0	4	0.00	21	MRRFLILLYVFLVSSVLGFI
270	2983834	1	unk	2	\|ali\|phd\|phdHtm\|	584	0	2	0.00	19	MFALILAFLIMFLSFLPFHL
271	2983867	1	out	2	\|ali\|phd\|phdHtm\|	262	9	5	16.00	24	MYLVYALSLAFTLSVFLSVF
272	2983901	1	out	2	\|ali\|phd\|phdHtm\|	300	3	4	3.67	30	MHTVIEGRVNYILVGLFILL
273	2982807	1	out	1	\|ali\|phd\|phdHtm\|	205	8	6	8.00	23	MNTEIIVLFIIHFIMINENV
274	2983143	1	out	1	\|ali\|phd\|phdHtm\|	253	1	5	1.13	64	MQISLSFTSSSIPGRQKLGT
275	2983193	1	out	1	\|ali\|phd\|phdHtm\|	267	9	5	14.44	46	MSSFASFLDMWRDLDKYLSS
276	2983581	1	out	1	\|ali\|phd\|phdHtm\|	350	8	3	8.00	259	METTIFQFQKTFFTKPPKER
277	2983697	1	unk	1	\|ali\|phd\|phdHtm\|	288	0	5	0.00	20	MILILLFLLINFLFAERVFY
278	2983716	1	unk	1	\|ali\|phd\|phdHtm\|	281	0	4	0.00	18	MILVLVLGIILTLSFYAADL
279	2983837	1	out	1	\|ali\|phd\|phdHtm\|	276	6	4	6.44	27	MNRGMTLIELLVALALSIIL
280	2984186	1	out	1	\|ali\|phd\|phdHtm\|	345	9	4	24.31	44	MEAQAGFDTFIEATRYLFRG
281	2984352	1	out	1	\|ali\|phd\|phdHtm\|	216	6	7	6.05	60	MANKRKEFIKLNLNKERKAF

Top - Previous - Next - CUBIC - PP home