| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3....,....4.. |
| seq | GTTCYCGKTIGIYWFGTKTCPSNRGYTGSCGYFLGICCYPVD | | | |
| dssp | --EEEE--EEEEEEE------------EEEEE--EEEEE--- | | | |
| mlrprdsec | --EEEE----EEEEEE--------------EEEEEEEEEE-- | +2.7 | +7.6 | -0.09 |
| phd | --EEE----EEEEEEE----------E-EE-EEEEEEEEE-- | +6.3 | +10.6 | -0.05 |
| phdpsi | --EEE----EEEEEEE----------E-EE-EEEEEEEEE-- | +5.3 | +9.7 | -0.06 |
| porter | ---E-----EEEEEE-----------------EEEEEEE--- | -1.9 | -1.6 | -0.19 |
| prof_king | --EEEE----EEEEEEE-----------------EEEEE--- | +6.0 | +8.3 | -0.04 |
| profsec | -EE-------EEEEEE---------EEEE---EE-EEEE--- | -11.0 | +6.5 | -0.29 |
| psipred | --EE-------EEEEE---------EEEE---EEEEEEEE-- | -9.5 | +5.9 | -0.28 |
| sable | --EEE----EEEEEEE--------------EEEEEEEE---- | +2.6 | +7.6 | -0.10 |
| sable2 | --EEE-----EEEEE---------------EEEEEEEE---- | +1.7 | +7.9 | -0.10 |
| samt99_sec | ---E-----EEEEEEE---------------EEEEEEE---- | -4.5 | +1.1 | -0.20 |
| scratch | --EEE---EEEEEE------------------EEEEEE---- | +0.6 | +10.0 | -0.11 |
| sspro4 | --EEE---EEEEEE------------------EEEEEE---- | -2 | +8.6 | -0.14 |
| yaspin | --EEEE---EEEEEEE-------------EEEEEEEEE--- | +11.5 | +11.9 | -0.03 |