EVA: Detailed information for proteins added on: 2002_12_11

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_12_11	1j0t	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HORMONE/GROWTH FACTOR	MOLECULE: MOLT-INHIBITING HORMONE; CHAIN: A; SYNONYM: MIH; ENGINEERED: YES	MARSUPENAEUS JAPONICUS; ORGANISM_TAXID: 27405;	H.KATAYAMA,K.NAGATA,T.OHIRA,F.YUMOTO,M.TANOKURA,H.NAGASAWA
2002_12_11	1mg2	D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: METHYLAMINE DEHYDROGENASE, HEAVY CHAIN; CHAIN: A, E, I, M; SYNONYM: MADH; EC: 1.4.99.3; ENGINEERED: YES; MUTATION: YES; MOLECULE: METHYLAMINE DEHYDROGENASE, LIGHT CHAIN; CHAIN: B, F, J, N; SYNONYM: MADH; EC: 1.4.99.3; ENGINEERED: YES; MOLECULE: AMICYANIN; CHAIN: C, G, K, O; ENGINEERED: YES; MOLECULE: CYTOCHROME C-L; CHAIN: D, H, L, P; SYNONYM: CYTOCHROME C551I; ENGINEERED: YES	PARACOCCUS DENITRIFICANS; ORGANISM_TAXID: 266; PARACOCCUS DENITRIFICANS; ORGANISM_TAXID: 266; PARACOCCUS DENITRIFICANS; ORGANISM_TAXID: 266; PARACOCCUS DENITRIFICANS; ORGANISM_TAXID: 266;	D.SUN,Z.W.CHEN,F.S.MATHEWS,V.L.DAVIDSON
2002_12_11	1md0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: C-ETS-1 PROTEIN; CHAIN: A, B; FRAGMENT: ETS DOMAIN, RESIDUES 300-440; SYNONYM: P54; ENGINEERED: YES	MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090; GENE: ETS-1;	C.W.GARVIE,M.A.PUFALL,B.J.GRAVES,C.WOLBERGER
2002_12_11	1lrr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	REPLICATION INHIBITOR/DNA	MOLECULE: 5'-D(CPAPCPCPGPAPTPCPGPAPCPT)-3'; CHAIN: B, E; ENGINEERED: YES; MOLECULE: 5'-D(APGPTPCPGP(6MA)PTPCPGPGPTPG)-3'; CHAIN: C, F; ENGINEERED: YES; MOLECULE: SEQA PROTEIN; CHAIN: A, D; FRAGMENT: RESIDUES 51-181; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: SYNTHETIC OLIGONUCLOTIDE; SYNTHETIC: YES; OTHER_DETAILS: SYNTHETIC OLIGONUCLOTIDE; ESCHERICHIA COLI; ORGANISM_TAXID: 562; GENE: SEQA;	A.GUARNE,Q.ZHAO,R.GUIRLANDO,W.YANG
2002_12_11	1m41	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: FMNH2-DEPENDENT ALKANESULFONATE MONOOXYGENASE; CHAIN: A, B; EC: 1.1.-.-; ENGINEERED: YES	ESCHERICHIA COLI; ORGANISM_TAXID: 562; GENE: SSUD;	E.EICHHORN,C.A.DAVEY,D.F.SARGENT,T.LEISINGER,T.J.RICHMOND

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field