EVA: Detailed information for proteins added on: 2002_10_16

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_10_16	1gyy	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ISOMERASE	MOLECULE: HYPOTHETICAL PROTEIN YDCE; CHAIN: A, B; SYNONYM: YDCE, B1461; EC: 5.3.2.1; ENGINEERED: YES; OTHER_DETAILS: INACTIVATED BY (E)-2-FLUORO-P- HYDROXYCINNAMATE	ESCHERICHIA COLI; ORGANISM_TAXID: 562;	J.ALMRUD,A.KERN,S.WANG,R.CZERWINSKI,W.JOHNSON,A.MURZIN, M.HACKERT,C.WHITMAN
2002_10_16	1k5o	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN BINDING	MOLECULE: CPI-17; CHAIN: A; FRAGMENT: RESIDUES 1-86; SYNONYM: 17-KDA PKC-POTENTIATED INHIBITORY PROTEIN OF PP1; ENGINEERED: YES	SUS SCROFA; PIG; ORGANISM_TAXID: 9823; GENE: PORCINE AORTA;	S.OHKI,M.ETO,E.KARIYA,T.HAYANO,Y.HAYASHI,M.YAZAWA, D.BRAUTIGAN,M.KAINOSHO
2002_10_16	1h2s	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: SENSORY RHODOPSIN II; CHAIN: A; FRAGMENT: RESIDUES 1-225; ENGINEERED: YES; OTHER_DETAILS: HIS-TAG; MOLECULE: SENSORY RHODOPSIN II TRANSDUCER; CHAIN: B; FRAGMENT: RESIDUES 23-82; SYNONYM: TRANSDUCER HTR II FRAGMENT , HTR-II, METHYL-ACCEPTING PHOTOTAXIS PROTEIN II, MPP-II; ENGINEERED: YES; OTHER_DETAILS: HIS-TAG	NATRONOMONAS PHARAONIS; ORGANISM_TAXID: 2257; NATRONOMONAS PHARAONIS; ORGANISM_TAXID: 2257;	V.I.GORDELIY,J.LABAHN,R.MOUKHAMETZIANOV,R.EFREMOV,J.GRANZIN, R.SCHLESINGER,G.BUELDT,T.SAVOPOL,A.SCHEIDIG,J.P.KLARE, M.ENGELHARD
2002_10_16	1j54	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: DNA POLYMERASE III, EPSILON CHAIN; CHAIN: A; FRAGMENT: N-TERMINAL EXONUCLEASE DOMAIN (RESIDUES 1-186); EC: 2.7.7.7; ENGINEERED: YES	ESCHERICHIA COLI; ORGANISM_TAXID: 562;	S.HAMDAN,P.D.CARR,S.E.BROWN,D.L.OLLIS,N.E.DIXON
2002_10_16	1m1e	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: BETA-CATENIN; CHAIN: A; FRAGMENT: ARMADILLO REPEAT REGION (RESIDUES 134-671); ENGINEERED: YES; MOLECULE: ICAT; CHAIN: B; ENGINEERED: YES	MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090; HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606;	D.L.DANIELS,W.I.WEIS

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field