EVA: Detailed information for proteins added on: 2002_09_25

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_09_25	1miu	B-A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION/ANTITUMOR PROTEIN	MOLECULE: DELETED IN SPLIT HAND/SPLIT FOOT PROTEIN 1; CHAIN: B; SYNONYM: DSS1, SPLIT HAND/FOOT DELETED PROTEIN 1; ENGINEERED: YES; MOLECULE: BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN; CHAIN: A; FRAGMENT: RESIDUES 2378-3115; SYNONYM: BRCA2; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090;	H.YANG,P.D.JEFFREY,J.MILLER,E.KINNUCAN,Y.SUN,N.H.THOMA, N.ZHENG,P.L.CHEN,W.H.LEE,N.P.PAVLETICH
2002_09_25	1m2o	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN TRANSPORT/SIGNALING PROTEIN	MOLECULE: PROTEIN TRANSPORT PROTEIN SEC23; CHAIN: A, C; SYNONYM: SEC23; SEC23P; CYTOPLASMIC GTPASE-ACTIVATING PROTEIN; SEC23 COPII-COAT PROTEIN; ENGINEERED: YES; MOLECULE: GTP-BINDING PROTEIN SAR1; CHAIN: B, D; SYNONYM: SAR1P, A GTP-BINDING PROTEIN; GTP BINDING PROTEIN SAR1P; SAR1 G-PROTEIN; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: SEC23; SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: SAR1;	X.BI,R.A.CORPINA,J.GOLDBERG
2002_09_25	1l8q	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA; CHAIN: A; FRAGMENT: RESIDUES 76-399; ENGINEERED: YES	AQUIFEX AEOLICUS; ORGANISM_TAXID: 63363; GENE: DNAA;	J.P.ERZBERGER,M.M.PIRRUCCELLO,J.M.BERGER
2002_09_25	1m2v	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN TRANSPORT	MOLECULE: PROTEIN TRANSPORT PROTEIN SEC23; CHAIN: A; SYNONYM: SEC23; SEC23P; CYTOPLASMIC GTPASE-ACTIVATING PROTEIN; SEC23 COPII-COAT PROTEIN; ENGINEERED: YES; MOLECULE: PROTEIN TRANSPORT PROTEIN SEC24; CHAIN: B; SYNONYM: SEC24; SEC24P; SEC24 PROTEIN; ABNORMAL NUCLEAR MORPHOLOGY 1 SEC24 COPII-COAT PROTEIN; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: SEC23; SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: SAR1;	X.BI,R.A.CORPINA,J.GOLDBERG

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field