EVA: Detailed information for proteins added on: 2002_06_12

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_06_12	1l6p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ELECTRON TRANSPORT	MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; CHAIN: A; FRAGMENT: RESIDUES 20-143; SYNONYM: C-TYPE CYTOCHROME BIOGENESIS PROTEIN CYCZ, INNER MEMBRANE COPPER TOLERANCE PROTEIN; ENGINEERED: YES	ESCHERICHIA COLI; ORGANISM_TAXID: 562;	C.W.GOULDING,M.R.SAWAYA,A.PARSEGHIAN
2002_06_12	1k8v	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	UNKNOWN FUNCTION	MOLECULE: NEUROPEPTIDE F; CHAIN: A; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN MONIEZIA EXPANSA (SHEEP TAPEWORM).	M.MISKOLZIE,G.KOTOVYCH
2002_06_12	1lf7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	IMMUNE SYSTEM	MOLECULE: COMPLEMENT PROTEIN C8GAMMA; CHAIN: A; SYNONYM: COMPLEMENT COMPONENT C8 GAMMA CHAIN; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: 9Q34.3;	E.ORTLUND,C.L.PARKER,S.F.SCHRECK,S.GINELL,W.MINOR, J.M.SODETZ,L.LEBIODA
2002_06_12	1jy4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DE NOVO PROTEIN	MOLECULE: B4DIMER; CHAIN: A, B; ENGINEERED: YES	SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.	J.VENKATRAMAN,G.A.NAGANA GOWDA,P.BALARAM
2002_06_12	1l2w	I	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: YOPE REGULATOR; CHAIN: A, B, C, D, E, F, G, H; SYNONYM: YOPE CHAPERONE SYCE; ENGINEERED: YES; MOLECULE: OUTER MEMBRANE VIRULENCE PROTEIN YOPE; CHAIN: I, J, K, L; FRAGMENT: CHAPERONE-BINDING DOMAIN; ENGINEERED: YES	YERSINIA PSEUDOTUBERCULOSIS; ORGANISM_TAXID: 633; GENE: SYCE; YERSINIA PSEUDOTUBERCULOSIS; ORGANISM_TAXID: 633; GENE: YOPE;	S.C.BIRTALAN,R.M.PHILLIPS,P.GHOSH
2002_06_12	1kmd	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ENDOCYTOSIS/EXOCYTOSIS	MOLECULE: VACUOLAR MORPHOGENESIS PROTEIN VAM7; CHAIN: A; FRAGMENT: PX DOMAIN, RESIDUES 8-124; SYNONYM: VAM7P; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932;	J.LU,J.GARCIA,I.DULUBOVA,T.C.SUDHOF,J.RIZO

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field