EVA: Detailed information for proteins added on: 2002_06_05

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_06_05	1l2p	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: ATP SYNTHASE B CHAIN; CHAIN: A; FRAGMENT: DIMERIZATION DOMAIN (RESIDUES 62-122); EC: 3.6.3.34; ENGINEERED: YES	ESCHERICHIA COLI; ORGANISM_TAXID: 562;	P.A.DEL RIZZO,S.D.DUNN,Y.BI,B.H.SHILTON
2002_06_05	1l9v	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRAL PROTEIN	MOLECULE: ROTAVIRUS-NSP2; CHAIN: A; FRAGMENT: NSP2 OF ROTAVIRUS; ENGINEERED: YES	SIMIAN 11 ROTAVIRUS (SEROTYPE 3 / STRAIN SA11-RAMIG); ORGANISM_TAXID: 36435; STRAIN: SA11-RAMIG; GENE: GENE SEGMENT 8;	H.JAYARAM,Z.TARAPOREWALA,J.T.PATTON,B.V.PRASAD
2002_06_05	1l8y	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: UPSTREAM BINDING FACTOR 1; CHAIN: A; FRAGMENT: HMG BOX 5 DOMAIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606;	W.YANG,Y.XU,J.WU,W.ZENG,Y.SHI
2002_06_05	1kw4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: POLYHOMEOTIC; CHAIN: A; FRAGMENT: SAM DOMAIN; ENGINEERED: YES; MUTATION: YES	DROSOPHILA MELANOGASTER; FRUIT FLY; ORGANISM_TAXID: 7227;	C.A.KIM,M.GINGERY,R.M PILPA,J.U.BOWIE
2002_06_05	1lq7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DE NOVO PROTEIN	MOLECULE: ALPHA3W; CHAIN: A; ENGINEERED: YES; OTHER_DETAILS: PROTEIN MODEL FOR TRYPTOPHANYL RADICAL	OTHER_DETAILS: DE NOVO DESIGN/SYNTHETIC GENE: GENE GENERATED USING OVERLAPPING PCR METHOD FROM SYNTHETIC OLIGOS	Q.-H.DAI,C.TOMMOS,E.J.FUENTES,M.BLOMBERG,P.L.DUTTON,A.J.WAND
2002_06_05	1l1o	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: REPLICATION PROTEIN A 14 KDA SUBUNIT; CHAIN: A, D; FRAGMENT: RPA14; ENGINEERED: YES; MOLECULE: REPLICATION PROTEIN A 32 KDA SUBUNIT; CHAIN: B, E; FRAGMENT: RPA32 CENTRAL DOMAIN (RESIDUES 44-171); ENGINEERED: YES; MOLECULE: REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT; CHAIN: C, F; FRAGMENT: RPA70 C-TERMINAL DOMAIN (RESIDUES 436-616); ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: RFA3_HUMAN; HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: RFA2_HUMAN; HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: RFA1_HUMAN;	E.V.BOCHKAREVA,S.KOROLEV,S.P.LEES-MILLER,A.BOCHKAREV

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field