EVA: Detailed information for proteins added on: 2002_05_29

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_05_29	1lr0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN TRANSPORT	MOLECULE: TOLA PROTEIN; CHAIN: A; FRAGMENT: PERIPLASMIC DOMAIN (RESIDUES 226-347); ENGINEERED: YES	PSEUDOMONAS AERUGINOSA; ORGANISM_TAXID: 287; GENE: TOLA;	M.WITTY,C.SANZ,A.SHAH,J.G.GROSSMAN,K.MIZUGUCHI,R.N.PERHAM, B.LUISI
2002_05_29	1l1s	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: HYPOTHETICAL PROTEIN MTH1491; CHAIN: A; ENGINEERED: YES	METHANOTHERMOBACTER THERMAUTOTROPHICUS; ORGANISM_TAXID: 145262; GENE: ORF1491;	D.CHRISTENDAT,V.SARIDAKIS,Y.KIM,P.A.KUMAR,X.XU,A.SEMESI, A.JOACHIMIAK,C.H.ARROWSMITH,A.M.EDWARDS,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG)
2002_05_29	1kpp	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL CYCLE	MOLECULE: TUMOR SUSCEPTIBILITY GENE 101 PROTEIN; CHAIN: A; FRAGMENT: UEV DOMAIN, RESIDUES 1-145; SYNONYM: TSG101; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: TSG101;	O.PORNILLOS,S.L.ALAM,R.L.RICH,D.G.MYSZKA,D.R.DAVIS, W.I.SUNDQUIST
2002_05_29	1k45	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYROLASE	MOLECULE: XYLANASE; CHAIN: A; FRAGMENT: SECOND FAMILY 4 CARBOHYDRATE BINDING MODULE (CBM4-2)(RESIDUES 211-373); EC: 3.2.1.8; ENGINEERED: YES	RHODOTHERMUS MARINUS; ORGANISM_TAXID: 29549; GENE: XYN10A;	P.J.SIMPSON,S.J.JAMIESON,M.ABOU-HACHEM,E.NORDBERG-KARLSSON, H.J.GILBERT,O.HOLST,M.P.WILLIAMSON
2002_05_29	1kuu	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: CONSERVED PROTEIN; CHAIN: A; ENGINEERED: YES	METHANOTHERMOBACTER; ORGANISM_TAXID: 145260; GENE: MTH1020;	V.SARIDAKIS,D.CHRISTENDAT,A.THYGESEN,C.H.ARROWSMITH, A.M.EDWARDS,E.F.PAI
2002_05_29	1hxv	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: TRIGGER FACTOR; CHAIN: A; FRAGMENT: PPIASE DOMAIN (RESIDUES 150-250); ENGINEERED: YES	MYCOPLASMA GENITALIUM; ORGANISM_TAXID: 2097;	M.VOGTHERR,T.N.PARAC,M.MAURER,A.PAHL,K.FIEBIG

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field