EVA: Detailed information for proteins added on: 2002_05_22

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_05_22	1lpl	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: HYPOTHETICAL 25.4 KDA PROTEIN F53F4.3 IN CHROMOSOME V; CHAIN: A; FRAGMENT: CAP-GLY DOMAIN; ENGINEERED: YES	CAENORHABDITIS ELEGANS; ORGANISM_TAXID: 6239; GENE: F53F4.3;	S.LI,J.FINLEY,Z.-J.LIU,S.H.QIU,C.H.LUAN,M.CARSON,J.TSAO, D.JOHNSON,G.LIN,J.ZHAO,W.THOMAS,L.A.NAGY,B.SHA,L.J.DELUCAS, B.-C.WANG,M.LUO,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG)
2002_05_22	1jni	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: DIHEME CYTOCHROME C NAPB; CHAIN: A; FRAGMENT: SMALL SUBUNIT OF THE PERIPLASMIC NITRATE REDUCTASE; SYNONYM: PERIPLASMIC NITRATE REDUCTASE; NAPB; ENGINEERED: YES	HAEMOPHILUS INFLUENZAE; ORGANISM_TAXID: 727;	A.BRIGE,D.LEYS,T.E.MEYER,M.A.CUSANOVICH,J.J.VAN BEEUMEN
2002_05_22	1juh	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: QUERCETIN 2,3-DIOXYGENASE; CHAIN: A, B, C, D; EC: 1.13.11.24	ASPERGILLUS JAPONICUS; ORGANISM_TAXID: 34381	F.FUSETTI,K.H.SCHROETER,R.A.STEINER,B.W.DIJKSTRA
2002_05_22	1go4	G	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CELL CYCLE	MOLECULE: MAD1 (MITOTIC ARREST DEFICIENT)-LIKE 1; CHAIN: E, F, G, H; FRAGMENT: RESIDUES 485-584; ENGINEERED: YES; MOLECULE: MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A; CHAIN: A, B, C, D; SYNONYM: MAD2, MAD2-LIKE 1, HSMAD2; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; OTHER_DETAILS: DICISTRONIC VECTOR; HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; OTHER_DETAILS: DICISTRONIC VECTOR	L.SIRONI,M.MAPELLI,K.T.JEANG,A.MUSACCHIO
2002_05_22	1kv4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIBIOTIC	MOLECULE: MORICIN; CHAIN: A; ENGINEERED: YES; MUTATION: YES	BOMBYX MORI; DOMESTIC SILKWORM; ORGANISM_TAXID: 7091;	H.HEMMI,J.ISHIBASHI,S.HARA,M.YAMAKAWA
2002_05_22	1li1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: COLLAGEN ALPHA 1(IV); CHAIN: A, B, D, E; FRAGMENT: NONCOLLAGENOUS DOMAIN 1; MOLECULE: COLLAGEN ALPHA 2(IV); CHAIN: C, F; FRAGMENT: NONCOLLAGENOUS DOMAIN 1	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; OTHER_DETAILS: PLACENTA; HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; OTHER_DETAILS: PLACENTA	M.E.THAN,S.HENRICH,R.HUBER,A.RIES,K.MANN,K.KUHN,R.TIMPL, G.P.BOURENKOV,H.D.BARTUNIK,W.BODE

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field