EVA: Detailed information for proteins added on: 2002_04_24

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

 

date id chains PDB ASCII DSSP ASCII FASTA ASCII PSI-Blast ASCII PSI-Blast HTMLDSSP headerDSSP compndDSSP sourceDSSP author
2002_04_241kl7 Apdb_asciidssp fasta psi_asciipsi_html LYASEMOLECULE: THREONINE SYNTHASE; CHAIN: A, B; EC: 4.2.99.2; ENGINEERED: YESSACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932;M.GARRIDO-FRANCO,S.EHLERT,A.MESSERSCHMIDT,S.MARINKOVIC, R.HUBER,B.LABER,G.P.BOURENKOV,T.CLAUSEN
2002_04_241gqw Bpdb_asciidssp fasta psi_asciipsi_html OXYGENASEMOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE; CHAIN: A, B; SYNONYM: TAURINE DIOXYGENASE, 2-AMINOETHANESULFONATE DIOXYGENASE, SULFATE STARVATION-INDUCED PROTEIN 3; EC: 1.14.11.17; ENGINEERED: YESESCHERICHIA COLI; ORGANISM_TAXID: 562;J.M.ELKINS,M.J.RYLE,I.J.CLIFTON,J.C.DUNNING-HOTOPP, J.S.LLOYD,N.I.BURZLAFF,J.E.BALDWIN,R.P.HAUSINGER,P.L.ROACH
2002_04_241l7j Apdb_asciidssp fasta psi_asciipsi_html ISOMERASEMOLECULE: GALACTOSE MUTAROTASE; CHAIN: A, B; SYNONYM: ALDOSE 1-EPIMERASE; EC: 5.1.3.3; ENGINEERED: YES; MUTATION: YESLACTOCOCCUS LACTIS; ORGANISM_TAXID: 1358; GENE: GALM;H.M.HOLDEN,J.B.THODEN
2002_04_241ksv Apdb_asciidssp fasta psi_asciipsi_html LYASEMOLECULE: RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A; CHAIN: A; SYNONYM: 16S PSEUDOURIDYLATE 516 SYNTHASE, 16S PSEUDOURIDINE 516 SYNTHASE, URACIL HYDROLYASE; EC: 4.2.1.70; ENGINEERED: YESESCHERICHIA COLI; ORGANISM_TAXID: 562;J.SIVARAMAN,V.SAUVE,R.LAROCQUE,E.A.STURA,J.D.SCHRAG, M.CYGLER,A.MATTE
2002_04_241l7k Bpdb_asciidssp fasta psi_asciipsi_html ISOMERASEMOLECULE: GALACTOSE MUTAROTASE; CHAIN: A, B; SYNONYM: ALDOSE 1-EPIMERASE; EC: 5.1.3.3; ENGINEERED: YES; MUTATION: YESLACTOCOCCUS LACTIS; ORGANISM_TAXID: 1358; GENE: GALM;H.M.HOLDEN,J.B.THODEN
2002_04_241ken Apdb_asciidssp fasta psi_asciipsi_html VIRAL PROTEIN/IMMUNE SYSTEMMOLECULE: HEMAGGLUTININ HA1; CHAIN: A, C, E; MOLECULE: HEMAGGLUTININ HA2; CHAIN: B, D, F; FRAGMENT: FAB FRAGMENT OF ANTIBODY; OTHER_DETAILS: BROMELAIN DIGESTED; MOLECULE: INFLUENZA VIRUS INFECTIVITY NEUTRALIZING ANTIBODY (LIGHT CHAIN); CHAIN: L, U; MOLECULE: INFLUENZA VIRUS INFECTIVITY NEUTRALIZING ANTIBODY (HEAVY CHAIN); CHAIN: H, TINFLUENZA A VIRUS (A/X-31(H3N2)); ORGANISM_TAXID: 132504; STRAIN: X31; INFLUENZA A VIRUS (A/X-31(H3N2)); ORGANISM_TAXID: 132504; STRAIN: X31; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090C.BARBEY-MARTIN,B.GIGANT,T.BIZEBARD,L.J.CALDER,S.A.WHARTO, J.J.SKEHEL,M.KNOSSOW
2002_04_241jqh Bpdb_asciidssp fasta psi_asciipsi_html TRANSFERASEMOLECULE: IGF-1 RECEPTOR KINASE; CHAIN: A, B, C; FRAGMENT: KINASE DOMAIN; EC: 2.7.1.112; ENGINEERED: YES; MUTATION: YESHOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606;A.PAUTSCH,A.ZOEPHEL,H.AHORN,W.SPEVAK,R.HAUPTMANN,H.NAR
2002_04_241ksk Apdb_asciidssp fasta psi_asciipsi_html LYASEMOLECULE: RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A; CHAIN: A; SYNONYM: 16S PSEUDOURIDYLATE 516 SYNTHASE, 16S PSEUDOURIDINE 516 SYNTHASE, URACIL HYDROLYASE; EC: 4.2.1.70; ENGINEERED: YESESCHERICHIA COLI; ORGANISM_TAXID: 562;J.SIVARAMAN,V.SAUVE,R.LAROCQUE,E.A.STURA,J.D.SCHRAG, M.CYGLER,A.MATTE
2002_04_241gqw Apdb_asciidssp fasta psi_asciipsi_html OXYGENASEMOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE; CHAIN: A, B; SYNONYM: TAURINE DIOXYGENASE, 2-AMINOETHANESULFONATE DIOXYGENASE, SULFATE STARVATION-INDUCED PROTEIN 3; EC: 1.14.11.17; ENGINEERED: YESESCHERICHIA COLI; ORGANISM_TAXID: 562;J.M.ELKINS,M.J.RYLE,I.J.CLIFTON,J.C.DUNNING-HOTOPP, J.S.LLOYD,N.I.BURZLAFF,J.E.BALDWIN,R.P.HAUSINGER,P.L.ROACH
2002_04_241igo Apdb_asciidssp fasta psi_asciipsi_html HYDROLASEMOLECULE: FAMILY 11 XYLANASE; CHAIN: A, B; SYNONYM: ENDO-1,4-BETA XYLANASE, FAMILY G XYLANASE; EC: 3.2.1.8BACILLUS SUBTILIS; ORGANISM_TAXID: 1423; STRAIN: B230A.J.OAKLEY,C.THOMSON,T.HEINRICH,R.DUNLOP,M.C.J.WILCE
2002_04_241k8b Apdb_asciidssp fasta psi_asciipsi_html TRANSLATIONMOLECULE: PROBABLE TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT; CHAIN: A; SYNONYM: EIF-2-BETA; ENGINEERED: YESMETHANOCALDOCOCCUS JANNASCHII; ORGANISM_TAXID: 2190;S.CHO,D.W.HOFFMAN
2002_04_241ken Lpdb_asciidssp fasta psi_asciipsi_html VIRAL PROTEIN/IMMUNE SYSTEMMOLECULE: HEMAGGLUTININ HA1; CHAIN: A, C, E; MOLECULE: HEMAGGLUTININ HA2; CHAIN: B, D, F; FRAGMENT: FAB FRAGMENT OF ANTIBODY; OTHER_DETAILS: BROMELAIN DIGESTED; MOLECULE: INFLUENZA VIRUS INFECTIVITY NEUTRALIZING ANTIBODY (LIGHT CHAIN); CHAIN: L, U; MOLECULE: INFLUENZA VIRUS INFECTIVITY NEUTRALIZING ANTIBODY (HEAVY CHAIN); CHAIN: H, TINFLUENZA A VIRUS (A/X-31(H3N2)); ORGANISM_TAXID: 132504; STRAIN: X31; INFLUENZA A VIRUS (A/X-31(H3N2)); ORGANISM_TAXID: 132504; STRAIN: X31; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090C.BARBEY-MARTIN,B.GIGANT,T.BIZEBARD,L.J.CALDER,S.A.WHARTO, J.J.SKEHEL,M.KNOSSOW
2002_04_241h6f Bpdb_asciidssp fasta psi_asciipsi_html TRANSCRIPTION FACTORMOLECULE: T-BOX TRANSCRIPTION FACTOR TBX3; CHAIN: A, B; FRAGMENT: T-DOMAIN RESIDUES 101-291; SYNONYM: TBX3 TRANSCRIPTION FACTOR, T-BOX PROTEIN 3; ENGINEERED: YES; MOLECULE: 5'-D(*TP*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP* AP*GP*GP*TP*GP*TP*GP*AP*AP*AP*T)-3'; CHAIN: C, D; FRAGMENT: PALINDROMIC BINDING SITEHOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; SYNTHETIC: YES; SYNTHETIC; ORGANISM_TAXID: 32630M.COLL,C.W.MULLER
2002_04_241l3e Apdb_asciidssp fasta psi_asciipsi_html TRANSCRIPTIONMOLECULE: HYPOXIA INDUCIBLE FACTOR-1 ALPHA SUBUNIT; CHAIN: A; FRAGMENT: C-TERMINAL TRANSACTIVATION DOMAIN (CTAD); ENGINEERED: YES; MOLECULE: P300 PROTEIN; CHAIN: B; FRAGMENT: CYSTEINE/HISTIDINE-RICH 1 DOMAIN (CH1); ENGINEERED: YESHOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: HYPOXIA INDUCIBLE FACTOR-1 ALPHA; HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: P300;S.J.FREEDMAN,Z.J.SUN,F.POY,A.L.KUNG,D.M.LIVINGSTON,G.WAGNER, M.J.ECK
2002_04_241gkn Apdb_asciidssp fasta psi_asciipsi_html COMPLEMENTMOLECULE: COMPLEMENT RECEPTOR TYPE 1; CHAIN: A; FRAGMENT: MODULES 15 AND 16, OF SITE 2 RESIDUE 942-1065; SYNONYM: CR1, C3B/C4B RECEPTOR, CD35, ANTIGEN; ENGINEERED: YES; MUTATION: YES; OTHER_DETAILS: FIRST TWO MODULES OF SITE 2 IN CR1. A C3B/C4B BINDING SITEHOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; OTHER_DETAILS: RECOMBINANT TECHNOLOGY USING HUMAN GENE (NOT SYNTHETIC)B.O.SMITH,R.L.MALLIN,M.KRYCH-GOLDBERG,X.WANG,R.E.HAUHART, K.BROMEK,D.UHRIN,J.P.ATKINSON,P.N.BARLOW
2002_04_241jqh Apdb_asciidssp fasta psi_asciipsi_html TRANSFERASEMOLECULE: IGF-1 RECEPTOR KINASE; CHAIN: A, B, C; FRAGMENT: KINASE DOMAIN; EC: 2.7.1.112; ENGINEERED: YES; MUTATION: YESHOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606;A.PAUTSCH,A.ZOEPHEL,H.AHORN,W.SPEVAK,R.HAUPTMANN,H.NAR
2002_04_241ken Hpdb_asciidssp fasta psi_asciipsi_html VIRAL PROTEIN/IMMUNE SYSTEMMOLECULE: HEMAGGLUTININ HA1; CHAIN: A, C, E; MOLECULE: HEMAGGLUTININ HA2; CHAIN: B, D, F; FRAGMENT: FAB FRAGMENT OF ANTIBODY; OTHER_DETAILS: BROMELAIN DIGESTED; MOLECULE: INFLUENZA VIRUS INFECTIVITY NEUTRALIZING ANTIBODY (LIGHT CHAIN); CHAIN: L, U; MOLECULE: INFLUENZA VIRUS INFECTIVITY NEUTRALIZING ANTIBODY (HEAVY CHAIN); CHAIN: H, TINFLUENZA A VIRUS (A/X-31(H3N2)); ORGANISM_TAXID: 132504; STRAIN: X31; INFLUENZA A VIRUS (A/X-31(H3N2)); ORGANISM_TAXID: 132504; STRAIN: X31; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090C.BARBEY-MARTIN,B.GIGANT,T.BIZEBARD,L.J.CALDER,S.A.WHARTO, J.J.SKEHEL,M.KNOSSOW
2002_04_241l7k Apdb_asciidssp fasta psi_asciipsi_html ISOMERASEMOLECULE: GALACTOSE MUTAROTASE; CHAIN: A, B; SYNONYM: ALDOSE 1-EPIMERASE; EC: 5.1.3.3; ENGINEERED: YES; MUTATION: YESLACTOCOCCUS LACTIS; ORGANISM_TAXID: 1358; GENE: GALM;H.M.HOLDEN,J.B.THODEN
2002_04_241kfr Apdb_asciidssp fasta psi_asciipsi_html OXYGEN STORAGE/TRANSPORTMOLECULE: HEMOGLOBIN; CHAIN: APARAMPHISTOMUM EPICLITUM; ORGANISM_TAXID: 54403M.MILANI,A.PESCE,S.DEWILDE,P.ASCENZI,L.MOENS,M.BOLOGNESI
2002_04_241jpx G-Dpdb_asciidssp fasta psi_asciipsi_html VIRAL PROTEINMOLECULE: GP41 ENVELOPE PROTEIN; CHAIN: A, D, G; FRAGMENT: N40(L6)C38; SYNONYM: ENVELOPE GLYCOPROTEIN; ENGINEERED: YESSIMIAN IMMUNODEFICIENCY VIRUS; ORGANISM_TAXID: 11723; STRAIN: MAC251;J.LIU,S.WANG,C.C.LABRANCHE,J.A.HOXIE,M.LU
2002_04_241gq8 Apdb_asciidssp fasta psi_asciipsi_html PECTIN METHYLESTERASEMOLECULE: PECTIN METHYLESTERASE; CHAIN: A; EC: 3.1.1.11DAUCUS CAROTA; CARROT; ORGANISM_TAXID: 4039; ORGAN: RIPE ROOTSK.JOHANSSON,M.EL-AHMAD,R.FRIEMANN,H.JORNVALL,O.MARKOVIC, H.EKLUND
2002_04_241kjt Apdb_asciidssp fasta psi_asciipsi_html TRANSPORT PROTEINMOLECULE: GABARAP; CHAIN: A; SYNONYM: GABA-A RECEPTOR-ASSOCIATED PROTEIN; ENGINEERED: YESRATTUS NORVEGICUS; NORWAY RAT; ORGANISM_TAXID: 10116;V.N.BAVRO,M.SOLA,A.BRACHER,M.KNEUSSEL,H.BETZ,W.WEISSENHORN
2002_04_241k4g Apdb_asciidssp fasta psi_asciipsi_html TRANSFERASEMOLECULE: TRNA-GUANINE TRANSGLYCOSYLASE; CHAIN: A; SYNONYM: TGT, QUEUINE TRNA-RIBOSYLTRANSFERASE, GUANINE INSERTION ENZYME; EC: 2.4.2.29; ENGINEERED: YESZYMOMONAS MOBILIS; ORGANISM_TAXID: 542;R.BRENK,E.A.MEYER,R.K.CASTELLANO,M.FURLER,M.T.STUBBS, G.KLEBE,F.DIEDERICH
2002_04_241l3e Bpdb_asciidssp fasta psi_asciipsi_html TRANSCRIPTIONMOLECULE: HYPOXIA INDUCIBLE FACTOR-1 ALPHA SUBUNIT; CHAIN: A; FRAGMENT: C-TERMINAL TRANSACTIVATION DOMAIN (CTAD); ENGINEERED: YES; MOLECULE: P300 PROTEIN; CHAIN: B; FRAGMENT: CYSTEINE/HISTIDINE-RICH 1 DOMAIN (CH1); ENGINEERED: YESHOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: HYPOXIA INDUCIBLE FACTOR-1 ALPHA; HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: P300;S.J.FREEDMAN,Z.J.SUN,F.POY,A.L.KUNG,D.M.LIVINGSTON,G.WAGNER, M.J.ECK
2002_04_241jpx Apdb_asciidssp fasta psi_asciipsi_html VIRAL PROTEINMOLECULE: GP41 ENVELOPE PROTEIN; CHAIN: A, D, G; FRAGMENT: N40(L6)C38; SYNONYM: ENVELOPE GLYCOPROTEIN; ENGINEERED: YESSIMIAN IMMUNODEFICIENCY VIRUS; ORGANISM_TAXID: 11723; STRAIN: MAC251;J.LIU,S.WANG,C.C.LABRANCHE,J.A.HOXIE,M.LU
2002_04_241jq0 Apdb_asciidssp fasta psi_asciipsi_html VIRAL PROTEINMOLECULE: GP41 ENVELOPE PROTEIN; CHAIN: A; FRAGMENT: N40(L6)C38; SYNONYM: ENVELOPE GLYCOPROTEIN; ENGINEERED: YES; MUTATION: YESSIMIAN IMMUNODEFICIENCY VIRUS; ORGANISM_TAXID: 11723; STRAIN: MAC251;J.LIU,S.WANG,C.C.LABRANCHE,J.A.HOXIE,M.LU
2002_04_241k4h Apdb_asciidssp fasta psi_asciipsi_html TRANSFERASEMOLECULE: TRNA-GUANINE-TRANSGLYCOYLASE; CHAIN: A; SYNONYM: TGT, QUEUINE TRNA-RIBOSYLTRANSFERASE, GUANINE INSERTION ENZYME; EC: 2.4.2.29; ENGINEERED: YESZYMOMONAS MOBILIS; ORGANISM_TAXID: 542;R.BRENK,E.A.MEYER,R.K.CASTELLANO,M.FURLER,M.T.STUBBS, G.KLEBE,F.DIEDERICH
2002_04_241gkg Apdb_asciidssp fasta psi_asciipsi_html COMPLEMENTMOLECULE: COMPLEMENT RECEPTOR TYPE 1; CHAIN: A; FRAGMENT: MODULES 16 AND 17, OF SITE 2, RESIDUE 1002-1133; SYNONYM: CR1, C3B/C4B RECEPTOR, CD35, ANTIGEN; ENGINEERED: YES; MUTATION: YES; OTHER_DETAILS: SECOND TWO MODULES OF SITE 2 IN CR1, A C3B/C4B BINDING SITEHOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; OTHER_DETAILS: RECOMBINANT TECHNOLOGY USING HUMAN GENE (NOT SYNTHETIC)B.O.SMITH,R.L.MALLIN,M.KRYCH-GOLDBERG,X.WANG,R.E.HAUHART, K.BROMEK,D.UHRIN,J.P.ATKINSON,P.N.BARLOW
2002_04_241h6f Apdb_asciidssp fasta psi_asciipsi_html TRANSCRIPTION FACTORMOLECULE: T-BOX TRANSCRIPTION FACTOR TBX3; CHAIN: A, B; FRAGMENT: T-DOMAIN RESIDUES 101-291; SYNONYM: TBX3 TRANSCRIPTION FACTOR, T-BOX PROTEIN 3; ENGINEERED: YES; MOLECULE: 5'-D(*TP*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP* AP*GP*GP*TP*GP*TP*GP*AP*AP*AP*T)-3'; CHAIN: C, D; FRAGMENT: PALINDROMIC BINDING SITEHOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; SYNTHETIC: YES; SYNTHETIC; ORGANISM_TAXID: 32630M.COLL,C.W.MULLER
2002_04_241k81 Apdb_asciidssp fasta psi_asciipsi_html TRANSLATIONMOLECULE: PROBABLE TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT; CHAIN: A; SYNONYM: EIF-2-BETA; ENGINEERED: YESMETHANOCALDOCOCCUS JANNASCHII; ORGANISM_TAXID: 2190;S.CHO,D.W.HOFFMAN
2002_04_241ken B-Tpdb_asciidssp fasta psi_asciipsi_html VIRAL PROTEIN/IMMUNE SYSTEMMOLECULE: HEMAGGLUTININ HA1; CHAIN: A, C, E; MOLECULE: HEMAGGLUTININ HA2; CHAIN: B, D, F; FRAGMENT: FAB FRAGMENT OF ANTIBODY; OTHER_DETAILS: BROMELAIN DIGESTED; MOLECULE: INFLUENZA VIRUS INFECTIVITY NEUTRALIZING ANTIBODY (LIGHT CHAIN); CHAIN: L, U; MOLECULE: INFLUENZA VIRUS INFECTIVITY NEUTRALIZING ANTIBODY (HEAVY CHAIN); CHAIN: H, TINFLUENZA A VIRUS (A/X-31(H3N2)); ORGANISM_TAXID: 132504; STRAIN: X31; INFLUENZA A VIRUS (A/X-31(H3N2)); ORGANISM_TAXID: 132504; STRAIN: X31; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090C.BARBEY-MARTIN,B.GIGANT,T.BIZEBARD,L.J.CALDER,S.A.WHARTO, J.J.SKEHEL,M.KNOSSOW
2002_04_241kslApdb_asciidssp fasta psi_asciipsi_html LYASEMOLECULE: RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A; CHAIN: A; SYNONYM: 16S PSEUDOURIDYLATE 516 SYNTHASE, 16S PSEUDOURIDINE 516 SYNTHASE, URACIL HYDROLYASE; EC: 4.2.1.70; ENGINEERED: YESESCHERICHIA COLI; ORGANISM_TAXID: 562;J.SIVARAMAN,V.SAUVE,R.LAROCQUE,E.A.STURA,J.D.SCHRAG, M.CYGLER,A.MATTE,MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS INITIATIVE (BSGI)

Notations used

date date of weekly update
id PDB identifier of protein
chains PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII ASCII (plain text) version of raw PDB file
DSSP ASCII ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII ASCII version of PDB sequence in FASTA format
PSI-Blast HTML gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header DSSP 'HEADER' field
DSSP compnd DSSP 'COMPND' field
DSSP source DSSP 'SOURCE' field
DSSP author DSSP 'AUTHOR' field