EVA: Detailed information for proteins added on: 2002_03_27

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_03_27	1kqr	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRAL PROTEIN	MOLECULE: VP4; CHAIN: A; FRAGMENT: SIALIC ACID BINDING DOMAIN (RESIDUES 62-224); ENGINEERED: YES	RHESUS ROTAVIRUS; ORGANISM_TAXID: 10969; GENE: SEGMENT 4;	P.R.DORMITZER,Z.-Y.J.SUN,G.WAGNER,S.C.HARRISON
2002_03_27	1kvk	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: MEVALONATE KINASE; CHAIN: A; SYNONYM: MK; EC: 2.7.1.36; ENGINEERED: YES	RATTUS NORVEGICUS; NORWAY RAT; ORGANISM_TAXID: 10116;	Z.FU,M.WANG,D.POTTER,H.M.MIZIOKO,J.J.KIM
2002_03_27	1j5b	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIFREEZE PROTEIN	MOLECULE: ANTIFREEZE PROTEIN TYPE 1 ANALOGUE; CHAIN: A; ENGINEERED: YES; MUTATION: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE OCCURS NATURALLY IN PSEUDOPLEURONECTES AMERICANUS (WINTER FLOUNDER).	E.LIEPINSH,G.OTTING,M.M.HARDING,L.G.WARD,J.P.MACKAY, A.D.HAYMET
2002_03_27	1jmk	O	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: SURFACTIN SYNTHETASE; CHAIN: C, O; FRAGMENT: THIOESTERASE DOMAIN; SYNONYM: SRFTE; ENGINEERED: YES	BACILLUS SUBTILIS; ORGANISM_TAXID: 1423; GENE: SRFA-C;	S.D.BRUNER,T.WEBER,R.M.KOHLI,D.SCHWARZER,M.A.MARAHIEL, C.T.WALSH,M.T.STUBBS
2002_03_27	1kjk	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRAL PROTEIN	MOLECULE: INTEGRASE; CHAIN: A; FRAGMENT: AMINO-TERMINAL DOMAIN (RESIDUES 1-64); ENGINEERED: YES	ENTEROBACTERIA PHAGE LAMBDA; ORGANISM_TAXID: 10710;	J.M.WOJCIAK,D.SARKAR,A.LANDY,R.T.CLUBB
2002_03_27	1kg0	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRAL PROTEIN/IMMUNE SYSTEM	MOLECULE: MHC CLASS II RECEPTOR HLA-DR1; CHAIN: A; FRAGMENT: ALPHA CHAIN, EXTRACELLULAR DOMAIN; ENGINEERED: YES; MOLECULE: MHC CLASS II RECEPTOR HLA-DR1; CHAIN: B; FRAGMENT: BETA CHAIN, EXTRACELLULAR DOMAIN; ENGINEERED: YES; MOLECULE: HEMAGGLUTININ HA PEPTIDE; CHAIN: D; FRAGMENT: ANTIGENIC PEPTIDE; ENGINEERED: YES; MOLECULE: GP42 PROTEIN; CHAIN: C; FRAGMENT: EXTRACELLULAR DOMAIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; SYNTHETIC: YES; OTHER_DETAILS: SYNTHETIC PEPTIDE DERIVED FROM INFLUENZA HEMAGGLUTININ SEQUENCE; HUMAN HERPESVIRUS 4; EPSTEIN-BARR VIRUS; ORGANISM_TAXID: 10376; STRAIN: GD1;	M.M.MULLEN,K.M.HAAN,R.LONGNECKER,T.S.JARDETZKY
2002_03_27	1k24	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: OUTER MEMBRANE PROTEIN; CHAIN: A; SYNONYM: OPCA PROTEIN	NEISSERIA MENINGITIDIS; ORGANISM_TAXID: 487; OTHER_DETAILS: OUTER MEMBRANE	S.M.PRINCE,M.ACHTMAN,J.P.DERRICK
2002_03_27	1l1c	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION/RNA	MOLECULE: TRANSCRIPTION ANTITERMINATOR LICT; CHAIN: A, B; FRAGMENT: RNA BINDING DOMAIN (RESIDUES 1-55); ENGINEERED: YES; MOLECULE: LICT MRNA ANTITERMINATOR HAIRPIN; CHAIN: C; ENGINEERED: YES	BACILLUS SUBTILIS; ORGANISM_TAXID: 1423; GENE: LICT; SYNTHETIC: YES; OTHER_DETAILS: LICT MRNA ANTITERMINATOR HAIRPIN MUTATED IN APICAL LOOP AND BASAL STEM TO INCREASE STABILITY. OBTAINED BY IN VITRO TRANSCRIPTION AND CHEMICAL SYNTHESIS.	Y.YANG,N.DECLERCK,X.MANIVAL,S.AYMERICH,M.KOCHOYAN
2002_03_27	1ib8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	NUCLEIC ACID BINDING PROTEIN	MOLECULE: CONSERVED PROTEIN SP14.3; CHAIN: A; ENGINEERED: YES	STREPTOCOCCUS PNEUMONIAE; ORGANISM_TAXID: 1313; GENE: ESSENTIAL GENE;	L.YU,A.H.GUNASEKERA,J.MACK,E.T.OLEJNICZAK,L.E.CHOVAN,X.RUAN, D.L.TOWNE,C.G.LERNER,S.W.FESIK

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field