EVA: Detailed information for proteins added on: 2002_02_13

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_02_13	1eq1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIPID BINDING PROTEIN	MOLECULE: APOLIPOPHORIN-III; CHAIN: A; SYNONYM: APOLP-III; ENGINEERED: YES; OTHER_DETAILS: INTACT EXCHANGEABLE APOLIPOPROTEIN	MANDUCA SEXTA; TOBACCO HORNWORM; ORGANISM_TAXID: 7130;	J.WANG,B.D.SYKES,R.O.RYAN
2002_02_13	1itp	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN BINDING	MOLECULE: PROTEINASE A INHIBITOR 1; CHAIN: A; SYNONYM: IA-1=SERINE PROTEINASE INHIBITOR; ENGINEERED: YES	PLEUROTUS OSTREATUS; OYSTER MUSHROOM; ORGANISM_TAXID: 5322;	H.SASAKAWA,S.YOSHINAGA,S.KOJIMA,A.TAMURA
2002_02_13	1i2v	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIMICROBIAL PROTEIN	MOLECULE: DEFENSIN HELIOMICIN; CHAIN: A; ENGINEERED: YES; MUTATION: YES	HELIOTHIS VIRESCENS; TOBACCO BUDWORM; ORGANISM_TAXID: 7102;	M.LAMBERTY,A.CAILLE,C.LANDON,S.TASSIN-MOINDROT,C.HETRU, P.BULET,F.VOVELLE
2002_02_13	1kwh	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	PROTEIN BINDING	MOLECULE: MACROMOLECULE-BINDING PERIPLASMIC PROTEIN; CHAIN: A; FRAGMENT: RESIDUES 1-492; SYNONYM: ALGQ2; ENGINEERED: YES	SPHINGOMONAS SP. A1; ORGANISM_TAXID: 90322; STRAIN: A1; GENE: ALGQ2;	K.MOMMA,B.MIKAMI,Y.MISHIMA,W.HASHIMOTO,K.MURATA
2002_02_13	1kps	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE/PROTEIN TRANSPORT	MOLECULE: UBIQUITIN-LIKE PROTEIN SUMO-1 CONJUGATING ENZYME; CHAIN: A, C; SYNONYM: UBC9, SUMO-1-PROTEIN LIGASE, UBIQUITIN CARRIER PROTEIN; EC: 6.3.2.19; ENGINEERED: YES; MOLECULE: RAN-GTPASE ACTIVATING PROTEIN 1; CHAIN: B, D; SYNONYM: RANGAP1; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: UBC9; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090; GENE: RANGAP1;	V.BERNIER-VILLAMOR,D.A.SAMPSON,M.J.MATUNIS,C.D.LIMA

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field