EVA: Detailed information for proteins added on: 2002_02_06

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_02_06	1jkz	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ANTIFUNGAL PROTEIN	MOLECULE: DEFENSE-RELATED PEPTIDE 1; CHAIN: A; SYNONYM: PSD1	PISUM SATIVUM; PEA; ORGANISM_TAXID: 3888; OTHER_DETAILS: ISOLATED FROM PEA SEEDS	M.S.ALMEIDA,K.M.S.CABRAL,E.KURTENBACH,F.C.L.ALMEIDA, A.P.VALENTE
2002_02_06	1kqi	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: ACTX-HI:OB4219; CHAIN: A	HADRONYCHE INFENSA; ORGANISM_TAXID: 153481; OTHER_DETAILS: HADRONYCHE INFENSA FOUND AT ORCHID BEACH, FRASER ISLAND, AUSTRALIA	K.J.ROSENGREN,D.WILSON,N.L.DALY,P.F.ALEWOOD,D.J.CRAIK
2002_02_06	1jmu	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRAL PROTEIN	MOLECULE: PROTEIN MU-1; CHAIN: A, C, E; FRAGMENT: N-TERMINUS (RESIDUES 2-42); ENGINEERED: YES; MOLECULE: PROTEIN MU-1; CHAIN: B, D, F; FRAGMENT: C-TERMINUS (RESIDUES 43-708); ENGINEERED: YES; MOLECULE: SIGMA 3 PROTEIN; CHAIN: G, H, I; SYNONYM: MAJOR OUTER CAPSID PROTEIN; ENGINEERED: YES; MUTATION: YES	REOVIRUS SP.; ORGANISM_TAXID: 10891; GENE: M2; REOVIRUS SP.; ORGANISM_TAXID: 10891; GENE: M2; REOVIRUS SP.; ORGANISM_TAXID: 10891; GENE: S4;	S.LIEMANN,M.L.NIBERT,S.C.HARRISON
2002_02_06	1k1f	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: BREAKPOINT CLUSTER REGION PROTEIN; CHAIN: A, B, C, D, E, F, G, H; FRAGMENT: BCR1-72; EC: 2.7.1.-; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606;	X.ZHAO,S.GHAFFARI,H.LODISH,V.N.MALASHKEVICH,P.S.KIM
2002_02_06	1kbh	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: NUCLEAR RECEPTOR COACTIVATOR; CHAIN: A; SYNONYM: ACTR; ENGINEERED: YES; MOLECULE: CREB-BINDING PROTEIN; CHAIN: B; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: ACTR; MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090; GENE: CBP;	S.J.DEMAREST,M.MARTINEZ-YAMOUT,J.CHUNG,H.CHEN,W.XU, H.J.DYSON,R.M.EVANS,P.E.WRIGHT
2002_02_06	1k0s	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: CHEMOTAXIS PROTEIN CHEW; CHAIN: A; FRAGMENT: CHEW; ENGINEERED: YES	THERMOTOGA MARITIMA; ORGANISM_TAXID: 2336; GENE: CHEW;	I.J.GRISWOLD,H.ZHOU,R.V.SWANSON,M.I.SIMON,F.W.DAHLQUIST
2002_02_06	1k28	D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE/STRUCTURAL PROTEIN	MOLECULE: TAIL-ASSOCIATED LYSOZYME; CHAIN: A; SYNONYM: PROTEIN GP5; EC: 3.2.1.17; ENGINEERED: YES; MOLECULE: BASEPLATE STRUCTURAL PROTEIN GP27; CHAIN: D; ENGINEERED: YES	ENTEROBACTERIA PHAGE T4; ORGANISM_TAXID: 10665; GENE: 5; ENTEROBACTERIA PHAGE T4; ORGANISM_TAXID: 10665; GENE: 27;	S.KANAMARU,P.G.LEIMAN,V.A.KOSTYUCHENKO,P.R.CHIPMAN, V.V.MESYANZHINOV,F.ARISAKA,M.G.ROSSMANN
2002_02_06	1k6w	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: CYTOSINE DEAMINASE; CHAIN: A; EC: 3.5.4.1; ENGINEERED: YES	ESCHERICHIA COLI; ORGANISM_TAXID: 562;	G.C.IRETON,G.MCDERMOTT,M.E.BLACK,B.L.STODDARD

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field