EVA: Detailed information for proteins added on: 2002_01_02

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2002_01_02	1ez4	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: LACTATE DEHYDROGENASE; CHAIN: A, B, C, D; EC: 1.1.1.27; ENGINEERED: YES	LACTOBACILLUS PENTOSUS; ORGANISM_TAXID: 1589;	H.UCHIKOBA,S.FUSHINOBU,T.WAKAGI,M.KONNO,H.TAGUCHI, H.MATSUZAWA
2002_01_02	1jr8	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: ERV2 PROTEIN, MITOCHONDRIAL; CHAIN: A, B; FRAGMENT: PROTEASE-RESISTANT DOMAIN; SYNONYM: ERV2P SULFHYDRYL OXIDASE; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: ERV2;	E.GROSS,C.S.SEVIER,A.VALA,C.A.KAISER,D.FASS
2002_01_02	1kkc	B-X	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: MANGANESE SUPEROXIDE DISMUTASE; CHAIN: A, B, X, Y; SYNONYM: MNSOD; EC: 1.15.1.1; ENGINEERED: YES	ASPERGILLUS FUMIGATUS; ORGANISM_TAXID: 5085;	S.FLUCKIGER,P.R.E.MITTL,L.SCAPOZZA,H.FIJTEN,G.FOLKERS, M.G.GRUTTER,K.BLASER,R.CRAMERI
2002_01_02	1k7c	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: RHAMNOGALACTURONAN ACETYLESTERASE; CHAIN: A; ENGINEERED: YES	ASPERGILLUS ACULEATUS; ORGANISM_TAXID: 5053;	A.MOLGAARD,S.LARSEN
2002_01_02	1jr8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: ERV2 PROTEIN, MITOCHONDRIAL; CHAIN: A, B; FRAGMENT: PROTEASE-RESISTANT DOMAIN; SYNONYM: ERV2P SULFHYDRYL OXIDASE; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: ERV2;	E.GROSS,C.S.SEVIER,A.VALA,C.A.KAISER,D.FASS
2002_01_02	1jra	D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: ERV2 PROTEIN, MITOCHONDRIAL; CHAIN: A, B, C, D; FRAGMENT: PROTEASE-RESISTANT DOMAIN; SYNONYM: ERV2P SULFHYDRYL OXIDASE; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: ERV2;	E.GROSS,C.S.SEVIER,A.VALA,C.A.KAISER,D.FASS
2002_01_02	1ijh	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: CHOLESTEROL OXIDASE; CHAIN: A; EC: 1.1.3.6; ENGINEERED: YES; MUTATION: YES; OTHER_DETAILS: FAD COFACTOR NON-COVALENTLY BOUND TO THE ENZYME	STREPTOMYCES SP.; ORGANISM_TAXID: 1931; GENE: CHOA;	A.VRIELINK,P.I.LARIO
2002_01_02	1jra	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: ERV2 PROTEIN, MITOCHONDRIAL; CHAIN: A, B, C, D; FRAGMENT: PROTEASE-RESISTANT DOMAIN; SYNONYM: ERV2P SULFHYDRYL OXIDASE; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: ERV2;	E.GROSS,C.S.SEVIER,A.VALA,C.A.KAISER,D.FASS
2002_01_02	1jad	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: PHOSPHOLIPASE C BETA; CHAIN: A, B; FRAGMENT: C-TERMINUS; SYNONYM: PLC-BETA; EC: 3.1.4.11; ENGINEERED: YES; MUTATION: YES	MELEAGRIS GALLOPAVO; TURKEY; ORGANISM_TAXID: 9103; CELL: ERYTHROCYTE;	A.U.SINGER,G.L.WALDO,T.K.HARDEN,J.SONDEK
2002_01_02	1kni	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: LYSOZYME; CHAIN: A; SYNONYM: LYSIS PROTEIN, MURAMIDASE, ENDOLYSIN; EC: 3.2.1.17; ENGINEERED: YES; MUTATION: YES	ENTEROBACTERIA PHAGE T4; ORGANISM_TAXID: 10665;	R.H.JACOBSON,M.MATSUMURA,H.R.FABER,B.W.MATTHEWS
2002_01_02	1jgk	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TOXIN	MOLECULE: CANDOXIN; CHAIN: A	BUNGARUS CANDIDUS; ORGANISM_TAXID: 92438; OTHER_DETAILS: SNAKE VENOM PROTEIN	R.P.VENKITAKRISHNAN,K.V.R.CHARY,M.R.KINI,G.GOVIL
2002_01_02	1ijl	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: PHOSPHOLIPASE A2; CHAIN: A, B; EC: 3.1.1.4	DEINAGKISTRODON ACUTUS; CHINESE MOCCASIN; ORGANISM_TAXID: 36307	L.GU,H.ZHANG,S.SONG,Y.ZHOU,Z.LIN
2002_01_02	1joc	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MEMBRANE PROTEIN	MOLECULE: EARLY ENDOSOMAL AUTOANTIGEN 1; CHAIN: A, B; FRAGMENT: C-TERMINAL DOMAIN, FYVE DOMAIN; SYNONYM: EEA1; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606;	J.J.DUMAS,E.MERITHEW,D.RAJAMANI,S.HAYES,D.LAWE,S.CORVERA, D.G.LAMBRIGHT
2002_01_02	1k9r	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: 65 KDA YES-ASSOCIATED PROTEIN; CHAIN: A; FRAGMENT: WILD TYPE WW DOMAIN; SYNONYM: YAP65; ENGINEERED: YES; MOLECULE: WW DOMAIN BINDING PROTEIN-1; CHAIN: B; FRAGMENT: RESIDUES 149-153; SYNONYM: WBP-1; ENGINEERED: YES; MUTATION: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE WAS SYNTHETICALLY OBTAINED, BY SEMIAUTOMATED SPOT SYNTHESIS IN A CELLULOSE SUPPORT.; SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE WAS SYNTHETICALLY OBTAINED BY SPOT SYNTHESIS IN A CELLULOSE SUPPORT.	J.R.PIRES,F.TAHA-NEJAD,F.TOEPERT,T.AST,U.HOFFMULLER, J.SCHNEIDER-MERGENER,R.KUHNE,M.J.MACIAS,H.OSCHKINAT
2002_01_02	1k9q	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL PROTEIN	MOLECULE: 65 KDA YES-ASSOCIATED PROTEIN; CHAIN: A; FRAGMENT: WILD TYPE WW DOMAIN; SYNONYM: YAP65; ENGINEERED: YES; MOLECULE: WW DOMAIN BINDING PROTEIN-1; CHAIN: B; FRAGMENT: RESIDUES 149-153; SYNONYM: WBP-1; ENGINEERED: YES; MUTATION: YES	SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE WAS SYNTHETICALLY OBTAINED, BY SEMIAUTOMATED SPOT SYNTHESIS IN A CELLULOSE SUPPORT.; SYNTHETIC: YES; OTHER_DETAILS: THIS SEQUENCE WAS SYNTHETICALLY OBTAINED BY SPOT SYNTHESIS IN A CELLULOSE SUPPORT.	J.R.PIRES,F.TAHA-NEJAD,F.TOEPERT,T.AST,U.HOFFMULLER, J.SCHNEIDER-MERGENER,R.KUHNE,M.J.MACIAS,H.OSCHKINAT
2002_01_02	1jh1	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: MATRIX METALLOPROTEINASE 8; CHAIN: A; FRAGMENT: MMP-8 CATALYTIC DOMAIN; SYNONYM: NEUTROPHIL COLLAGENASE; EC: 3.4.24.34; ENGINEERED: YES	HOMO SAPIENS; HUMAN; ORGANISM_TAXID: 9606; GENE: MMP-8;	J.SCHRODER,A.HENKE,H.WENZEL,H.BRANDSTETTER,H.G.STAMMLER, A.STAMMLER,W.D.PFEIFFER,H.TSCHESCHE
2002_01_02	1kb0	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE; CHAIN: A; SYNONYM: QUINOHEMOPROTEIN ETHANOL DEHYDROGENASE TYPE 1; EC: 1.1.99.-	COMAMONAS TESTOSTERONI; ORGANISM_TAXID: 285	H.J.ROZEBOOM,A.OUBRIE
2002_01_02	1k2f	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIGASE, PROTEIN BINDING	MOLECULE: SIAH-1A PROTEIN; CHAIN: A, B; FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 93-282); SYNONYM: SEVEN IN ABSENTIA 1A; ENGINEERED: YES	MUS MUSCULUS; HOUSE MOUSE; ORGANISM_TAXID: 10090;	G.POLEKHINA,C.M.HOUSE,N.TRAFICANTE,J.P.MACKAY,F.RELAIX, D.A.SASSOON,M.W.PARKER,D.D.L.BOWTELL
2002_01_02	1kkc	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: MANGANESE SUPEROXIDE DISMUTASE; CHAIN: A, B, X, Y; SYNONYM: MNSOD; EC: 1.15.1.1; ENGINEERED: YES	ASPERGILLUS FUMIGATUS; ORGANISM_TAXID: 5085;	S.FLUCKIGER,P.R.E.MITTL,L.SCAPOZZA,H.FIJTEN,G.FOLKERS, M.G.GRUTTER,K.BLASER,R.CRAMERI
2002_01_02	1jra	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: ERV2 PROTEIN, MITOCHONDRIAL; CHAIN: A, B, C, D; FRAGMENT: PROTEASE-RESISTANT DOMAIN; SYNONYM: ERV2P SULFHYDRYL OXIDASE; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; ORGANISM_TAXID: 4932; GENE: ERV2;	E.GROSS,C.S.SEVIER,A.VALA,C.A.KAISER,D.FASS
2002_01_02	1ez4	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	OXIDOREDUCTASE	MOLECULE: LACTATE DEHYDROGENASE; CHAIN: A, B, C, D; EC: 1.1.1.27; ENGINEERED: YES	LACTOBACILLUS PENTOSUS; ORGANISM_TAXID: 1589;	H.UCHIKOBA,S.FUSHINOBU,T.WAKAGI,M.KONNO,H.TAGUCHI, H.MATSUZAWA
2002_01_02	1jgs	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSCRIPTION	MOLECULE: MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARR; CHAIN: A; ENGINEERED: YES	ESCHERICHIA COLI; ORGANISM_TAXID: 562;	M.N.ALEKSHUN,S.B.LEVY,T.R.MEALY,B.A.SEATON,J.F.HEAD

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field