| METHOD about: | ../../doc/explain_methods.html#PX_about_prof_king |
| METHOD url: | PROF_king |
| METHOD quote: | M Ouali, R King:: Cascaded multiple classifiers for secondary structure prediction. Protein Science, 9, 1162-1176, 1999. |
| TYPE : | sec |
| NPROT : | 230 |
| NWEEKS : | 69 |
| AVE_Q3 : | 72.1 |
| AVE_SOV: | 67.1 |
| NOTE 1 : | here ALL results obtained for prof_king are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2008_04_09 | dssp | psum | 72.0 | 71 | 85 | 67 | 61 | 76 | 67 | 67.1 | 68.5 | 72.1 | 67.8 | 4.5 | 0.31 | 0.31 | 0.31 | 0.64 | 0.55 | 0.52 | 7956.5 | 10.9 | 8.4 |
| sec | 2008_04_09 | dssp | sig | 12.1 | 35 | 37 | 45 | 43 | 13 | 17 | 17.8 | 29.6 | 31.7 | 17.4 | 7.6 | 0.17 | 0.18 | 0.17 | 0.25 | 0.33 | 0.20 | 7894.2 | 11.2 | 10.0 |
| sec | 2008_04_09 | dssp | errsig | 0.79 | 2 | 2 | 3 | 2 | 0.87 | 1 | 1.1 | 1.9 | 2.0 | 1.1 | 0.50 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 520.5 | 0.73 | 0.66 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | prof_king | ALL | 230 | 72.1 | |
| sec | prof_king | 2001_04 | 1 | 80.9 | old/2001_04_prof_king.html |
| sec | prof_king | 2003_07 | 5 | 76.4 | old/2003_07_prof_king.html |
| sec | prof_king | 2003_08 | 5 | 72.3 | old/2003_08_prof_king.html |
| sec | prof_king | 2003_11 | 16 | 71.5 | old/2003_11_prof_king.html |
| sec | prof_king | 2003_12 | 19 | 72.0 | old/2003_12_prof_king.html |
| sec | prof_king | 2004_01 | 12 | 65.7 | old/2004_01_prof_king.html |
| sec | prof_king | 2004_02 | 18 | 68.2 | old/2004_02_prof_king.html |
| sec | prof_king | 2004_03 | 13 | 73.0 | old/2004_03_prof_king.html |
| sec | prof_king | 2004_04 | 11 | 73.2 | old/2004_04_prof_king.html |
| sec | prof_king | 2004_05 | 6 | 71.9 | old/2004_05_prof_king.html |
| sec | prof_king | 2004_06 | 7 | 78.0 | old/2004_06_prof_king.html |
| sec | prof_king | 2004_07 | 10 | 75.1 | old/2004_07_prof_king.html |
| sec | prof_king | 2004_08 | 17 | 75.8 | old/2004_08_prof_king.html |
| sec | prof_king | 2004_09 | 11 | 72.1 | old/2004_09_prof_king.html |
| sec | prof_king | 2004_10 | 10 | 74.8 | old/2004_10_prof_king.html |
| sec | prof_king | 2004_11 | 8 | 68.4 | old/2004_11_prof_king.html |
| sec | prof_king | 2004_12 | 1 | 69.7 | old/2004_12_prof_king.html |
| sec | prof_king | 2005_02 | 1 | 62.9 | old/2005_02_prof_king.html |
| sec | prof_king | 2005_03 | 16 | 68.9 | old/2005_03_prof_king.html |
| sec | prof_king | 2005_04 | 12 | 77.4 | old/2005_04_prof_king.html |
| sec | prof_king | 2005_05 | 11 | 74.8 | old/2005_05_prof_king.html |
| sec | prof_king | 2005_06 | 4 | 74.4 | old/2005_06_prof_king.html |
| sec | prof_king | 2005_07 | 15 | 68.2 | old/2005_07_prof_king.html |
| sec | prof_king | 2005_08 | 17 | 71.1 | old/2005_08_prof_king.html |
| sec | prof_king | 2005_09 | 3 | 80.2 | old/2005_09_prof_king.html |
| sec | prof_king | 2006_03 | 3 | 71.8 | old/2006_03_prof_king.html |
| sec | prof_king | ALL | 230 | 72.1 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |