| METHOD about: | ../../../doc/explain_methods.html#PX_about_prof_king |
| METHOD url: | PROF_king |
| TYPE : | sec |
| NPROT : | 230 |
| NWEEKS : | 69 |
| NOTE 1 : | here ALL results obtained for PROF_king in month 2006_03 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2006_03 | dssp | ALL_proteins:psum | 72.0 | 71 | 85 | 67 | 61 | 76 | 67 | 67.1 | 68.5 | 72.1 | 67.8 | 4.5 | 0.31 | 0.31 | 0.31 | 0.64 | 0.55 | 0.52 | 7956.5 | 10.9 | 8.4 |
| sec | 2006_03 | dssp | ALL_proteins:sig | 12.1 | 35 | 37 | 45 | 43 | 13 | 17 | 17.8 | 29.6 | 31.7 | 17.4 | 7.6 | 0.17 | 0.18 | 0.17 | 0.25 | 0.33 | 0.20 | 7894.2 | 11.2 | 10.0 |
| sec | 2006_03 | dssp | ALL_proteins:errsig | 0.79 | 2 | 2 | 3 | 2 | 0.87 | 1 | 1.1 | 1.9 | 2.0 | 1.1 | 0.50 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 520.5 | 0.73 | 0.66 |
| sec | 2006_03 | dssp | THIS_month:psum | 71.7 | 63 | 85 | 56 | 39 | 72 | 72 | 68.9 | 56.6 | 60.3 | 79.6 | 5.2 | 0.36 | 0.36 | 0.36 | 0.61 | 0.36 | 0.52 | 66.6 | 7 | 7 |
| sec | 2006_03 | dssp | 2aql:A | 68.1 | 76 | 86 | 0 | 0 | 70 | 63 | 49.4 | 42 | 0 | 82 | 6.3 | 0.41 | 0.43 | 0.41 | 0.62 | -0.10 | 0.46 | 100.0 | 6.0 | 2.0 |
| sec | 2006_03 | dssp | 2byf:A | 71.6 | 41 | 83 | 84 | 57 | 76 | 81 | 71.3 | 45 | 92 | 70 | 7.7 | 0.28 | 0.28 | 0.30 | 0.52 | 0.54 | 0.58 | 100.0 | 10.0 | 13.0 |
| sec | 2006_03 | dssp | 2d1p:B | 75.6 | 74 | 87 | 85 | 62 | 72 | 74 | 86.1 | 83 | 89 | 87 | 1.6 | 0.38 | 0.39 | 0.38 | 0.69 | 0.66 | 0.53 | 0.0 | 5.0 | 6.0 |
| sec | 2006_03 | dssp | THIS_month:psum | 71.7 | 63 | 85 | 56 | 39 | 72 | 72 | 68.9 | 56.6 | 60.3 | 79.6 | 5.2 | 0.36 | 0.36 | 0.36 | 0.61 | 0.36 | 0.52 | 66.6 | 7 | 7 |
| sec | 2006_03 | dssp | ALL_proteins:psum | 72.0 | 71 | 85 | 67 | 61 | 76 | 67 | 67.1 | 68.5 | 72.1 | 67.8 | 4.5 | 0.31 | 0.31 | 0.31 | 0.64 | 0.55 | 0.52 | 7956.5 | 10.9 | 8.4 |
| sec | 2006_03 | dssp | ALL_proteins:sig | 12.1 | 35 | 37 | 45 | 43 | 13 | 17 | 17.8 | 29.6 | 31.7 | 17.4 | 7.6 | 0.17 | 0.18 | 0.17 | 0.25 | 0.33 | 0.20 | 7894.2 | 11.2 | 10.0 |
| sec | 2006_03 | dssp | ALL_proteins:errsig | 0.79 | 2 | 2 | 3 | 2 | 0.87 | 1 | 1.1 | 1.9 | 2.0 | 1.1 | 0.50 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.01 | 520.5 | 0.73 | 0.66 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |