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EVA sec results for: PSIpred month: 2005_08

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	224
NWEEKS :	68
NOTE 1 :	here ALL results obtained for PSIpred in month 2005_08 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2005_08 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2005_08	dssp	ALL_proteins:psum	77.8	86	82	66	74	75	75	75.3	81.1	72.5	70.3	2.5	0.38	0.37	0.38	0.71	0.64	0.59	8616.0	7.9	5.5
sec	2005_08	dssp	ALL_proteins:sig	11.3	35	33	46	51	15	14	16.4	23.3	32.6	18.2	4.5	0.18	0.19	0.19	0.22	0.29	0.20	8549.0	9.1	7.4
sec	2005_08	dssp	ALL_proteins:errsig	0.75	2	2	3	3	1	0.98	1.1	1.5	2.1	1.2	0.30	0.01	0.01	0.01	0.01	0.02	0.01	571.2	0.60	0.49
sec	2005_08	dssp	THIS_month:psum	78.3	65	63	32	42	77	75	76.5	63.5	64.1	73.5	2.2	0.41	0.39	0.42	0.69	0.70	0.58	81.2	6.6	5.5

sec	2005_08	dssp	1t0c:A	64.5	0	0	0	0	71	100	56.6	0	100	60	9.6	0.25	0.35	0.17	1.0	1.0	0.44	100.0	9.0	35.0
sec	2005_08	dssp	1wlz:A	80.0	98	79	0	0	58	81	66.8	78	0	53	0.0	0.40	0.34	0.46	0.66	1.0	0.55	100.0	14.0	3.0
sec	2005_08	dssp	1wmm:A	72.0	94	65	66	86	63	68	71.6	89	75	58	0.0	0.42	0.42	0.42	0.70	0.66	0.42	0.0	10.0	7.0
sec	2005_08	dssp	1xmk:A	60.8	61	71	30	37	72	54	67.6	73	40	67	11.3	0.12	0.13	0.13	0.29	0.25	0.41	100.0	7.0	2.0
sec	2005_08	dssp	1z4h:A	66.7	61	80	12	20	91	62	68.0	69	16	82	10.6	0.22	0.21	0.23	0.47	0.06	0.58	100.0	12.0	4.0
sec	2005_08	dssp	1zeq:X	79.8	0	0	77	100	88	72	86.3	0	93	84	1.1	0.47	0.49	0.46	-0.04	0.78	0.63	0.0	2.0	11.0
sec	2005_08	dssp	1zv1:A	93.2	100	92	0	0	69	100	96.6	100	100	84	0.0	0.61	0.55	0.68	0.79	1.0	0.79	100.0	6.0	0.00
sec	2005_08	dssp	2a1j:A	95.2	97	95	0	0	91	95	98.4	100	100	95	0.0	0.71	0.71	0.72	0.89	1.0	0.89	100.0	1.0	0.00
sec	2005_08	dssp	2a20:A	76.7	0	0	53	88	97	74	60.8	0	61	70	0.0	0.30	0.20	0.41	1.0	0.61	0.47	100.0	10.0	10.0
sec	2005_08	dssp	2a65:A	79.2	87	86	0	0	56	60	62.5	67	0	50	1.3	0.17	0.17	0.17	0.47	-0.01	0.45	100.0	1.0	0.00
sec	2005_08	dssp	2a6q:A	89.5	97	95	62	100	91	75	87.6	90	75	91	0.0	0.70	0.69	0.72	0.92	0.75	0.75	100.0	1.0	6.0
sec	2005_08	dssp	2a6q:E	83.3	90	93	73	85	83	74	81.3	90	87	68	0.0	0.55	0.55	0.56	0.86	0.72	0.65	100.0	1.0	3.0
sec	2005_08	dssp	2a7y:A	63.8	0	0	76	71	79	59	70.7	0	93	82	0.0	0.28	0.22	0.35	1.0	0.60	0.29	100.0	18.0	2.0
sec	2005_08	dssp	2afd:A	92.0	100	87	0	0	82	100	95.9	98	100	92	0.0	0.66	0.65	0.68	0.84	1.0	0.84	100.0	7.0	0.00
sec	2005_08	dssp	2amy:A	81.2	86	82	76	89	78	75	84.9	90	86	78	1.2	0.47	0.47	0.48	0.74	0.78	0.62	0.0	1.0	3.0
sec	2005_08	dssp	2bw3:B	75.0	77	86	0	0	76	57	68.7	72	0	62	1.1	0.18	0.17	0.19	0.49	1.0	0.48	100.0	7.0	2.0

sec	2005_08	dssp	THIS_month:psum	78.3	65	63	32	42	77	75	76.5	63.5	64.1	73.5	2.2	0.41	0.39	0.42	0.69	0.70	0.58	81.2	6.6	5.5

sec	2005_08	dssp	ALL_proteins:psum	77.8	86	82	66	74	75	75	75.3	81.1	72.5	70.3	2.5	0.38	0.37	0.38	0.71	0.64	0.59	8616.0	7.9	5.5
sec	2005_08	dssp	ALL_proteins:sig	11.3	35	33	46	51	15	14	16.4	23.3	32.6	18.2	4.5	0.18	0.19	0.19	0.22	0.29	0.20	8549.0	9.1	7.4
sec	2005_08	dssp	ALL_proteins:errsig	0.75	2	2	3	3	1	0.98	1.1	1.5	2.1	1.2	0.30	0.01	0.01	0.01	0.01	0.02	0.01	571.2	0.60	0.49

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2005_08
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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