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EVA sec results for: SCRATCH (SSpro3) month: 2005_05

METHOD about:	../../../doc/explain_methods.html#PX_about_scratch
METHOD url:	SCRATCH (SSpro3)
TYPE :	sec
NPROT :	207
NWEEKS :	64
NOTE 1 :	here ALL results obtained for SCRATCH (SSpro3) in month 2005_05 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2005_05 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2005_05	dssp	ALL_proteins:psum	76.1	82	81	60	70	75	72	71.6	78.9	73.3	69.0	3.6	0.35	0.35	0.35	0.68	0.58	0.57	8164.2	7.9	6.8
sec	2005_05	dssp	ALL_proteins:sig	11.2	33	32	41	47	15	16	15.8	22.9	29.2	17.4	6.5	0.16	0.17	0.17	0.23	0.32	0.20	8102.2	8.5	9.0
sec	2005_05	dssp	ALL_proteins:errsig	0.78	2	2	2	3	1	1	1.1	1.5	2.0	1.2	0.45	0.01	0.01	0.01	0.01	0.02	0.01	563.1	0.59	0.62
sec	2005_05	dssp	THIS_month:psum	74.8	64	64	28	34	74	71	64.1	80.5	67.9	62.2	2.6	0.25	0.25	0.26	0.67	0.58	0.44	63.6	6.7	6.4

sec	2005_05	dssp	1q01:A	92.1	0	0	0	0	92	100	44.7	100	100	44	0.0	0.00	0.00	0.00	1.0	1.0	0.00	100.0	0.00	7.0
sec	2005_05	dssp	1t98:A	72.2	79	87	10	6	54	40	51.4	53	10	45	6.0	0.09	0.10	0.08	0.34	0.03	0.33	0.0	7.0	1.0
sec	2005_05	dssp	1xc5:A	70.6	96	55	0	0	55	96	47.4	96	100	34	0.0	0.24	0.25	0.25	0.51	1.0	0.51	0.0	26.0	0.00
sec	2005_05	dssp	1y5o:A	67.0	71	48	48	80	79	71	74.9	100	56	79	8.6	0.23	0.23	0.24	0.47	0.48	0.51	100.0	8.0	13.0
sec	2005_05	dssp	1yfu:A	78.2	65	80	69	90	89	71	70.2	64	79	64	0.0	0.41	0.40	0.43	0.68	0.69	0.58	100.0	2.0	8.0
sec	2005_05	dssp	1yhn:B	92.3	100	91	0	0	61	100	95.4	100	100	76	0.0	0.56	0.48	0.64	0.74	1.0	0.74	100.0	7.0	0.00
sec	2005_05	dssp	1ylx:A	67.0	82	82	44	82	86	51	63.0	63	58	68	5.0	0.32	0.32	0.33	0.75	0.43	0.47	100.0	0.00	20.0
sec	2005_05	dssp	1yp8:A	51.5	0	0	23	33	70	58	32.0	100	28	32	0.0	0.00	0.00	0.00	1.0	-0.07	-0.07	100.0	0.00	12.0
sec	2005_05	dssp	1z67:A	81.9	86	88	0	0	68	66	81.0	83	100	73	0.0	0.24	0.25	0.24	0.55	1.0	0.55	100.0	0.00	0.00
sec	2005_05	dssp	1zhh:B	71.0	62	87	70	78	83	55	65.9	62	66	72	4.3	0.31	0.32	0.32	0.60	0.65	0.50	0.0	12.0	2.0
sec	2005_05	dssp	2blf:B	79.0	71	96	50	11	87	81	79.4	65	50	98	4.9	0.39	0.43	0.36	0.72	0.19	0.68	0.0	12.0	8.0

sec	2005_05	dssp	THIS_month:psum	74.8	64	64	28	34	74	71	64.1	80.5	67.9	62.2	2.6	0.25	0.25	0.26	0.67	0.58	0.44	63.6	6.7	6.4

sec	2005_05	dssp	ALL_proteins:psum	76.1	82	81	60	70	75	72	71.6	78.9	73.3	69.0	3.6	0.35	0.35	0.35	0.68	0.58	0.57	8164.2	7.9	6.8
sec	2005_05	dssp	ALL_proteins:sig	11.2	33	32	41	47	15	16	15.8	22.9	29.2	17.4	6.5	0.16	0.17	0.17	0.23	0.32	0.20	8102.2	8.5	9.0
sec	2005_05	dssp	ALL_proteins:errsig	0.78	2	2	2	3	1	1	1.1	1.5	2.0	1.2	0.45	0.01	0.01	0.01	0.01	0.02	0.01	563.1	0.59	0.62

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2005_05
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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