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EVA sec results for: PROFsec month: 2005_05

METHOD about:	../../../doc/explain_methods.html#PX_about_profsec
METHOD url:	PROFsec
TYPE :	sec
NPROT :	232
NWEEKS :	70
NOTE 1 :	here ALL results obtained for PROFsec in month 2005_05 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2005_05 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2005_05	dssp	ALL_proteins:psum	76.6	78	85	70	66	77	72	74.5	78.7	76.2	71.2	3.1	0.37	0.38	0.36	0.69	0.61	0.57	8275.8	7.9	6.0
sec	2005_05	dssp	ALL_proteins:sig	10.9	32	34	46	44	15	15	15.2	23.5	28.0	17.7	5.3	0.17	0.18	0.18	0.24	0.29	0.19	8210.9	8.3	6.9
sec	2005_05	dssp	ALL_proteins:errsig	0.71	2	2	3	2	0.99	1	1.0	1.5	1.8	1.1	0.35	0.01	0.01	0.01	0.01	0.02	0.01	539.0	0.54	0.45
sec	2005_05	dssp	THIS_month:psum	79.8	64	70	32	40	80	74	71.4	83.2	71.6	67.1	1.7	0.33	0.32	0.35	0.71	0.75	0.54	81.8	7	5.8

sec	2005_05	dssp	1q01:A	86.8	0	0	0	0	86	100	43.0	100	100	43	0.0	0.00	0.00	0.00	1.0	1.0	0.00	100.0	0.00	13.0
sec	2005_05	dssp	1t98:A	73.7	77	91	30	30	67	39	57.7	58	30	57	2.6	0.14	0.16	0.13	0.43	0.27	0.37	100.0	12.0	0.00
sec	2005_05	dssp	1xc5:A	85.3	100	71	0	0	76	100	75.5	97	100	67	0.0	0.51	0.53	0.50	0.74	1.0	0.74	0.0	14.0	0.00
sec	2005_05	dssp	1y5o:A	69.6	80	58	53	75	77	71	67.7	100	62	61	6.0	0.27	0.27	0.27	0.60	0.48	0.51	100.0	6.0	10.0
sec	2005_05	dssp	1yfu:A	81.6	61	94	76	89	91	75	71.8	57	79	69	0.0	0.47	0.45	0.50	0.73	0.73	0.64	100.0	5.0	5.0
sec	2005_05	dssp	1yhn:B	89.2	98	89	0	0	53	87	93.8	100	100	69	0.0	0.37	0.32	0.43	0.63	1.0	0.63	100.0	7.0	0.00
sec	2005_05	dssp	1ylx:A	69.0	60	100	65	75	82	52	56.7	46	64	61	4.0	0.33	0.33	0.35	0.72	0.50	0.47	100.0	11.0	6.0
sec	2005_05	dssp	1yp8:A	78.8	0	0	46	100	100	74	72.0	100	53	83	0.0	0.36	0.30	0.43	1.0	0.58	0.58	100.0	0.00	21.0
sec	2005_05	dssp	1z67:A	89.5	86	98	0	0	96	73	93.2	95	100	88	0.0	0.53	0.56	0.51	0.77	1.0	0.77	100.0	8.0	0.00
sec	2005_05	dssp	1zhh:B	76.3	62	90	92	72	81	68	83.0	74	100	81	6.9	0.41	0.41	0.41	0.62	0.73	0.62	0.0	13.0	7.0
sec	2005_05	dssp	2blf:B	79.0	82	80	0	0	80	78	71.3	89	0	60	0.0	0.29	0.28	0.32	0.62	1.0	0.58	100.0	1.0	2.0

sec	2005_05	dssp	THIS_month:psum	79.8	64	70	32	40	80	74	71.4	83.2	71.6	67.1	1.7	0.33	0.32	0.35	0.71	0.75	0.54	81.8	7	5.8

sec	2005_05	dssp	ALL_proteins:psum	76.6	78	85	70	66	77	72	74.5	78.7	76.2	71.2	3.1	0.37	0.38	0.36	0.69	0.61	0.57	8275.8	7.9	6.0
sec	2005_05	dssp	ALL_proteins:sig	10.9	32	34	46	44	15	15	15.2	23.5	28.0	17.7	5.3	0.17	0.18	0.18	0.24	0.29	0.19	8210.9	8.3	6.9
sec	2005_05	dssp	ALL_proteins:errsig	0.71	2	2	3	2	0.99	1	1.0	1.5	1.8	1.1	0.35	0.01	0.01	0.01	0.01	0.02	0.01	539.0	0.54	0.45

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2005_05
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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