Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom Explain scores

EVA sec results for: Porter month: 2005_04

METHOD about:	../../../doc/explain_methods.html#PX_about_porter
METHOD url:	Porter
TYPE :	sec
NPROT :	73
NWEEKS :	24
NOTE 1 :	here ALL results obtained for Porter in month 2005_04 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2005_04 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2005_04	dssp	ALL_proteins:psum	79.9	85	84	66	80	78	73	76.3	80.1	74.6	73.4	1.6	0.39	0.38	0.40	0.73	0.68	0.60	9178.0	5.5	5.6
sec	2005_04	dssp	ALL_proteins:sig	9.9	34	33	46	54	13	15	14.2	21.7	31.0	14.7	3.7	0.15	0.16	0.16	0.23	0.27	0.17	9149.2	6.4	7.5
sec	2005_04	dssp	ALL_proteins:errsig	1.1	4	3	5	6	1	1	1.6	2.5	3.6	1.7	0.43	0.01	0.01	0.01	0.02	0.03	0.02	1070.8	0.75	0.88
sec	2005_04	dssp	THIS_month:psum	83.3	85	88	34	40	85	73	80.8	83.6	87	79	0.79	0.45	0.46	0.44	0.74	0.81	0.65	100	4.3	2.5

sec	2005_04	dssp	1v1c:A	70.6	100	60	50	75	85	69	65.0	80	55	71	2.9	0.28	0.28	0.28	0.76	0.40	0.48	100.0	2.0	14.0
sec	2005_04	dssp	1y74:A	89.5	89	97	0	0	87	58	81.7	82	100	78	0.0	0.39	0.44	0.35	0.65	1.0	0.65	100.0	7.0	0.00
sec	2005_04	dssp	1y74:B	80.0	75	100	0	0	100	47	71.6	71	100	74	0.0	0.37	0.44	0.31	0.59	1.0	0.59	100.0	19.0	0.00
sec	2005_04	dssp	1y9l:A	77.3	73	87	77	84	79	68	78.1	84	79	73	0.0	0.41	0.41	0.42	0.76	0.66	0.54	100.0	2.0	3.0
sec	2005_04	dssp	1ywy:A	79.7	66	100	80	74	83	79	75.1	75	86	69	1.3	0.43	0.42	0.45	0.79	0.64	0.62	100.0	5.0	2.0
sec	2005_04	dssp	1z0p:A	94.5	94	98	0	0	92	81	98.6	100	100	92	0.0	0.61	0.64	0.60	0.83	1.0	0.83	100.0	2.0	0.00
sec	2005_04	dssp	1z23:A	92.6	97	92	0	0	81	93	88.9	87	100	93	0.0	0.58	0.57	0.60	0.82	1.0	0.82	100.0	3.0	0.00
sec	2005_04	dssp	1z2n:X	75.9	79	74	70	83	76	73	74.6	75	75	73	2.8	0.36	0.36	0.37	0.65	0.69	0.56	100.0	2.0	4.0
sec	2005_04	dssp	1z3i:X	79.5	83	80	69	88	77	76	76.5	82	75	71	0.9	0.40	0.40	0.41	0.67	0.75	0.60	100.0	1.0	2.0
sec	2005_04	dssp	1z61:A	94.3	95	95	0	0	92	92	98.6	100	100	96	0.0	0.67	0.68	0.68	0.88	1.0	0.88	100.0	0.00	0.00

sec	2005_04	dssp	THIS_month:psum	83.3	85	88	34	40	85	73	80.8	83.6	87	79	0.79	0.45	0.46	0.44	0.74	0.81	0.65	100	4.3	2.5

sec	2005_04	dssp	ALL_proteins:psum	79.9	85	84	66	80	78	73	76.3	80.1	74.6	73.4	1.6	0.39	0.38	0.40	0.73	0.68	0.60	9178.0	5.5	5.6
sec	2005_04	dssp	ALL_proteins:sig	9.9	34	33	46	54	13	15	14.2	21.7	31.0	14.7	3.7	0.15	0.16	0.16	0.23	0.27	0.17	9149.2	6.4	7.5
sec	2005_04	dssp	ALL_proteins:errsig	1.1	4	3	5	6	1	1	1.6	2.5	3.6	1.7	0.43	0.01	0.01	0.01	0.02	0.03	0.02	1070.8	0.75	0.88

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2005_04
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Explain scores - Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top