| METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp2 |
| METHOD url: | APSSP2 |
| TYPE : | sec |
| NPROT : | 122 |
| NWEEKS : | 40 |
| NOTE 1 : | here ALL results obtained for APSSP2 in month 2004_06 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2004_06 | dssp | ALL_proteins:psum | 75.4 | 81 | 83 | 66 | 68 | 76 | 73 | 73.3 | 80.2 | 73.7 | 70.0 | 4.0 | 0.36 | 0.37 | 0.34 | 0.69 | 0.59 | 0.57 | 8606.5 | 9.0 | 6.8 |
| sec | 2004_06 | dssp | ALL_proteins:sig | 12.1 | 32 | 34 | 45 | 47 | 17 | 18 | 15.6 | 22.6 | 29.1 | 19.5 | 7.1 | 0.17 | 0.18 | 0.17 | 0.22 | 0.31 | 0.20 | 8555.7 | 10.5 | 8.8 |
| sec | 2004_06 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 4 | 4 | 1 | 1 | 1.4 | 2.0 | 2.6 | 1.7 | 0.64 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 774.5 | 0.95 | 0.80 |
| sec | 2004_06 | dssp | THIS_month:psum | 84.1 | 71 | 69 | 21 | 25 | 82 | 84 | 84.3 | 64.3 | 90.6 | 88.6 | 1.7 | 0.44 | 0.46 | 0.41 | 0.59 | 0.85 | 0.69 | 100 | 1.3 | 3 |
| sec | 2004_06 | dssp | 1sr4:C | 74.0 | 27 | 18 | 64 | 75 | 84 | 82 | 70.1 | 13 | 72 | 74 | 5.1 | 0.22 | 0.23 | 0.22 | 0.15 | 0.57 | 0.55 | 100.0 | 3.0 | 4.0 |
| sec | 2004_06 | dssp | 1ssz:A | 88.2 | 95 | 95 | 0 | 0 | 76 | 90 | 98.5 | 100 | 100 | 96 | 0.0 | 0.60 | 0.67 | 0.54 | 0.87 | 1.0 | 0.74 | 100.0 | 0.00 | 5.0 |
| sec | 2004_06 | dssp | 1w0b:A | 90.2 | 91 | 94 | 0 | 0 | 86 | 81 | 84.3 | 80 | 100 | 96 | 0.0 | 0.49 | 0.50 | 0.49 | 0.76 | 1.0 | 0.76 | 100.0 | 1.0 | 0.00 |
| sec | 2004_06 | dssp | THIS_month:psum | 84.1 | 71 | 69 | 21 | 25 | 82 | 84 | 84.3 | 64.3 | 90.6 | 88.6 | 1.7 | 0.44 | 0.46 | 0.41 | 0.59 | 0.85 | 0.69 | 100 | 1.3 | 3 |
| sec | 2004_06 | dssp | ALL_proteins:psum | 75.4 | 81 | 83 | 66 | 68 | 76 | 73 | 73.3 | 80.2 | 73.7 | 70.0 | 4.0 | 0.36 | 0.37 | 0.34 | 0.69 | 0.59 | 0.57 | 8606.5 | 9.0 | 6.8 |
| sec | 2004_06 | dssp | ALL_proteins:sig | 12.1 | 32 | 34 | 45 | 47 | 17 | 18 | 15.6 | 22.6 | 29.1 | 19.5 | 7.1 | 0.17 | 0.18 | 0.17 | 0.22 | 0.31 | 0.20 | 8555.7 | 10.5 | 8.8 |
| sec | 2004_06 | dssp | ALL_proteins:errsig | 1.0 | 2 | 3 | 4 | 4 | 1 | 1 | 1.4 | 2.0 | 2.6 | 1.7 | 0.64 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 774.5 | 0.95 | 0.80 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |