| Method | Number of proteins | Average ModZscore for all proteins | Comments |
|---|---|---|---|
| APSSP | 0 | ? | no longer tested |
| APSSP2 | 122 | 75.5 | |
| assp | ? | ? | no longer tested |
| HYPROSP II | 0 | ? | no longer tested |
| JNet | ? | ? | no longer tested |
| JPred | 0 | ? | no longer tested |
| JUFO | 0 | ? | no longer tested |
| mlrprdsec | 0 | ? | no longer tested |
| PHD | 0 | ? | no longer tested |
| PHDpsi | 229 | 75.0 | |
| Porter | 73 | 80.0 | |
| PROF | ? | ? | no longer tested |
| PROF_king | 230 | 72.1 | |
| PROFsec | 232 | 76.6 | |
| Prospect | 94 | 71.4 | |
| PSIpred | 224 | 77.9 | |
| PSSP | 0 | ? | no longer tested |
| SABLE | 232 | 76.1 | |
| SABLE2 | 159 | 76.8 | |
| samt99_sec# | ? | ? | no longer tested |
| SAM-T99sec | 204 | 77.3 | |
| SCRATCH (SSpro3) | 207 | 76.2 | |
| sspro | ? | ? | no longer tested |
| SSpro1 | 0 | ? | no longer tested |
| SSpro2 | 0 | ? | no longer tested |
| SSpro4 | 144 | 77.9 | |
| yaspin | 157 | 73.6 |