EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	517	115	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	393	90	method/apssp2.html
JPred	167	29	method/jpred.html
JUFO	133	38	method/jufo.html
PHD	446	101	method/phd.html
PHDpsi	440	101	method/phdpsi.html
PROF_king	443	107	method/prof_king.html
PROFsec	443	101	method/profsec.html
Prospect	315	87	method/prospect.html
PSIpred	443	108	method/psipred.html
PSSP	1	1	method/pssp.html
SABLE	156	45	method/sable.html
SABLE2	99	28	method/sable2.html
SAM-T99sec	396	108	method/samt99_sec.html
SCRATCH (SSpro3)	217	60	method/scratch.html
SSpro1	1	1	method/sspro1.html
SSpro2	257	48	method/sspro2.html
SSpro4	68	24	method/sspro4.html
yaspin	80	24	method/yaspin.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 60 proteins and 8 methods (HTML - ASCII)
- set 2: 136 proteins and 6 methods (HTML - ASCII)
- set 3: 136 proteins and 6 methods (HTML - ASCII)
- set 4: 138 proteins and 5 methods (HTML - ASCII)
- set 5: 138 proteins and 5 methods (HTML - ASCII)
- set 6: 141 proteins and 4 methods (HTML - ASCII)
- set 7: 7 proteins and 15 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	60	dssp	1	APSSP2	73.7	+/-1.8	73.1	+/-2.3	0.35	+/-0.02	91.7	+/-3.6
				PHD	72.5	+/-1.7	67.6	+/-2.4	0.33	+/-0.02	90.0	+/-3.9
				PHDpsi	72.6	+/-1.7	67.8	+/-2.4	0.34	+/-0.02	88.3	+/-4.2
				PROFsec	75.6	+/-1.8	76.0	+/-2.3	0.38	+/-0.03	85.0	+/-4.6
				PSIpred	76.6	+/-1.7	76.2	+/-2.5	0.36	+/-0.03	88.3	+/-4.2
				SAM-T99sec	76.3	+/-1.5	72.9	+/-1.9	0.38	+/-0.02	91.7	+/-3.6
common 1	60	dssp	2	PROF_king	70.4	+/-1.9	66.9	+/-2.5	0.32	+/-0.02	86.7	+/-4.4
				Prospect	69.2	+/-2.0	66.4	+/-2.7	0.31	+/-0.02	85.0	+/-4.6

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	136	dssp	1	PSIpred	78.0	+/-1.0	76.3	+/-1.5	0.38	+/-0.02	83.8	+/-3.2
				SAM-T99sec	78.0	+/-0.9	75.6	+/-1.3	0.40	+/-0.02	84.6	+/-3.1
common 2	136	dssp	2	PROFsec	76.4	+/-1.0	75.4	+/-1.4	0.37	+/-0.02	80.1	+/-3.4
common 2	136	dssp	3	PHD	74.4	+/-1.0	71.1	+/-1.4	0.34	+/-0.02	80.1	+/-3.4
				PHDpsi	74.6	+/-1.0	71.2	+/-1.4	0.35	+/-0.02	80.1	+/-3.4
common 2	136	dssp	4	PROF_king	72.7	+/-1.1	68.5	+/-1.5	0.32	+/-0.02	80.1	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	136	dssp	1	PSIpred	78.0	+/-1.0	76.3	+/-1.5	0.38	+/-0.02	83.8	+/-3.2
				SAM-T99sec	78.0	+/-0.9	75.6	+/-1.3	0.40	+/-0.02	84.6	+/-3.1
common 3	136	dssp	2	PROFsec	76.4	+/-1.0	75.4	+/-1.4	0.37	+/-0.02	80.1	+/-3.4
common 3	136	dssp	3	PHD	74.4	+/-1.0	71.1	+/-1.4	0.34	+/-0.02	80.1	+/-3.4
				PHDpsi	74.6	+/-1.0	71.2	+/-1.4	0.35	+/-0.02	80.1	+/-3.4
common 3	136	dssp	4	PROF_king	72.7	+/-1.1	68.5	+/-1.5	0.32	+/-0.02	80.1	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	138	dssp	1	PSIpred	77.8	+/-1.0	76.2	+/-1.5	0.38	+/-0.02	84.1	+/-3.1
				SAM-T99sec	77.9	+/-0.9	75.5	+/-1.3	0.39	+/-0.02	84.8	+/-3.1
common 4	138	dssp	2	PROFsec	76.5	+/-1.0	75.4	+/-1.4	0.38	+/-0.02	80.4	+/-3.4
common 4	138	dssp	3	PHD	74.4	+/-1.0	71.0	+/-1.5	0.35	+/-0.02	80.4	+/-3.4
				PHDpsi	74.6	+/-1.0	71.1	+/-1.5	0.35	+/-0.02	80.4	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	138	dssp	1	PSIpred	77.8	+/-1.0	76.2	+/-1.5	0.38	+/-0.02	84.1	+/-3.1
				SAM-T99sec	77.9	+/-0.9	75.5	+/-1.3	0.39	+/-0.02	84.8	+/-3.1
common 5	138	dssp	2	PROFsec	76.5	+/-1.0	75.4	+/-1.4	0.38	+/-0.02	80.4	+/-3.4
common 5	138	dssp	3	PHD	74.4	+/-1.0	71.0	+/-1.5	0.35	+/-0.02	80.4	+/-3.4
				PHDpsi	74.6	+/-1.0	71.1	+/-1.5	0.35	+/-0.02	80.4	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	141	dssp	1	PSIpred	77.7	+/-1.0	76.2	+/-1.4	0.38	+/-0.02	83.7	+/-3.1
common 6	141	dssp	2	PROFsec	76.3	+/-1.0	75.1	+/-1.4	0.37	+/-0.02	80.1	+/-3.4
common 6	141	dssp	3	PHD	74.4	+/-1.0	70.9	+/-1.4	0.34	+/-0.02	80.1	+/-3.4
				PHDpsi	74.5	+/-1.0	71.1	+/-1.4	0.35	+/-0.02	80.1	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 7			Sorted alphabetically for identical ranks!		MORE SCORES
common 7	7	dssp	1	APSSP2	81.1	+/-6.0	78.5	+/-6.0	0.53	+/-0.08	100.0	+/-3.8
				JUFO	74.0	+/-7.4	70.4	+/-11.1	0.38	+/-0.05	100.0	+/-3.8
				PHD	77.4	+/-7.9	69.6	+/-11.0	0.45	+/-0.07	100.0	+/-3.8
				PHDpsi	77.4	+/-7.9	69.6	+/-11.0	0.45	+/-0.07	100.0	+/-3.8
				PROF_king	76.0	+/-6.2	70.2	+/-7.7	0.43	+/-0.05	100.0	+/-3.8
				PROFsec	79.3	+/-9.1	79.5	+/-11.0	0.53	+/-0.05	85.7	+/-14.3
				Prospect	73.5	+/-5.3	71.9	+/-8.0	0.41	+/-0.04	100.0	+/-3.8
				Prospect	73.5	+/-5.3	71.9	+/-8.0	0.41	+/-0.04	100.0	+/-3.8
				PSIpred	82.3	+/-6.6	82.1	+/-10.1	0.52	+/-0.06	100.0	+/-3.8
				SABLE	77.9	+/-7.9	73.9	+/-11.3	0.48	+/-0.06	100.0	+/-3.8
				SABLE2	78.3	+/-8.0	70.3	+/-11.3	0.48	+/-0.07	100.0	+/-3.8
				SAM-T99sec	78.1	+/-6.8	73.4	+/-8.8	0.43	+/-0.08	100.0	+/-3.8
				SCRATCH (SSpro3)	76.2	+/-7.9	69.8	+/-10.3	0.45	+/-0.06	100.0	+/-3.8
				SSpro4	74.9	+/-7.7	65.0	+/-9.1	0.41	+/-0.06	100.0	+/-3.8
				yaspin	76.8	+/-6.6	73.6	+/-8.0	0.48	+/-0.05	100.0	+/-3.8