EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	558	129	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	401	95	method/apssp2.html
JPred	167	29	method/jpred.html
JUFO	133	38	method/jufo.html
mlrprdsec	37	13	method/mlrprdsec.html
PHD	487	115	method/phd.html
PHDpsi	481	115	method/phdpsi.html
Porter	40	13	method/porter.html
PROF_king	481	121	method/prof_king.html
PROFsec	484	115	method/profsec.html
Prospect	315	87	method/prospect.html
PSIpred	484	122	method/psipred.html
PSSP	1	1	method/pssp.html
SABLE	195	59	method/sable.html
SABLE2	138	42	method/sable2.html
SAM-T99sec	423	119	method/samt99_sec.html
SCRATCH (SSpro3)	258	74	method/scratch.html
SSpro1	1	1	method/sspro1.html
SSpro2	257	48	method/sspro2.html
SSpro4	109	38	method/sspro4.html
yaspin	120	38	method/yaspin.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 60 proteins and 8 methods (HTML - ASCII)
- set 2: 161 proteins and 6 methods (HTML - ASCII)
- set 3: 161 proteins and 6 methods (HTML - ASCII)
- set 4: 165 proteins and 5 methods (HTML - ASCII)
- set 5: 165 proteins and 5 methods (HTML - ASCII)
- set 6: 182 proteins and 4 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	60	dssp	1	APSSP2	73.7	+/-1.8	73.1	+/-2.3	0.35	+/-0.02	91.7	+/-3.6
				PHD	72.5	+/-1.7	67.6	+/-2.4	0.33	+/-0.02	90.0	+/-3.9
				PHDpsi	72.6	+/-1.7	67.8	+/-2.4	0.34	+/-0.02	88.3	+/-4.2
				PROFsec	75.6	+/-1.8	76.0	+/-2.3	0.38	+/-0.03	85.0	+/-4.6
				PSIpred	76.6	+/-1.7	76.2	+/-2.5	0.36	+/-0.03	88.3	+/-4.2
				SAM-T99sec	76.3	+/-1.5	72.9	+/-1.9	0.38	+/-0.02	91.7	+/-3.6
common 1	60	dssp	2	PROF_king	70.4	+/-1.9	66.9	+/-2.5	0.32	+/-0.02	86.7	+/-4.4
				Prospect	69.2	+/-2.0	66.4	+/-2.7	0.31	+/-0.02	85.0	+/-4.6

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	161	dssp	1	PSIpred	77.7	+/-0.9	75.9	+/-1.3	0.37	+/-0.01	85.1	+/-2.8
				SAM-T99sec	77.5	+/-0.8	74.9	+/-1.2	0.38	+/-0.01	83.2	+/-3.0
common 2	161	dssp	2	PROFsec	76.4	+/-0.9	75.3	+/-1.2	0.37	+/-0.01	81.4	+/-3.1
common 2	161	dssp	3	PHD	74.4	+/-0.9	70.7	+/-1.3	0.34	+/-0.01	80.1	+/-3.2
				PHDpsi	74.6	+/-0.9	70.8	+/-1.3	0.34	+/-0.01	80.1	+/-3.2
common 2	161	dssp	4	PROF_king	72.1	+/-1.0	67.5	+/-1.4	0.31	+/-0.01	79.5	+/-3.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	161	dssp	1	PSIpred	77.7	+/-0.9	75.9	+/-1.3	0.37	+/-0.01	85.1	+/-2.8
				SAM-T99sec	77.5	+/-0.8	74.9	+/-1.2	0.38	+/-0.01	83.2	+/-3.0
common 3	161	dssp	2	PROFsec	76.4	+/-0.9	75.3	+/-1.2	0.37	+/-0.01	81.4	+/-3.1
common 3	161	dssp	3	PHD	74.4	+/-0.9	70.7	+/-1.3	0.34	+/-0.01	80.1	+/-3.2
				PHDpsi	74.6	+/-0.9	70.8	+/-1.3	0.34	+/-0.01	80.1	+/-3.2
common 3	161	dssp	4	PROF_king	72.1	+/-1.0	67.5	+/-1.4	0.31	+/-0.01	79.5	+/-3.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	165	dssp	1	PROFsec	76.6	+/-0.9	75.3	+/-1.2	0.38	+/-0.01	81.8	+/-3.0
				PSIpred	77.6	+/-0.9	75.8	+/-1.3	0.37	+/-0.01	85.5	+/-2.8
				SAM-T99sec	77.4	+/-0.8	74.7	+/-1.2	0.38	+/-0.01	83.6	+/-2.9
common 4	165	dssp	2	PHD	74.4	+/-0.9	70.5	+/-1.3	0.34	+/-0.01	80.6	+/-3.1
				PHDpsi	74.6	+/-0.9	70.6	+/-1.3	0.34	+/-0.01	80.6	+/-3.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	165	dssp	1	PROFsec	76.6	+/-0.9	75.3	+/-1.2	0.38	+/-0.01	81.8	+/-3.0
				PSIpred	77.6	+/-0.9	75.8	+/-1.3	0.37	+/-0.01	85.5	+/-2.8
				SAM-T99sec	77.4	+/-0.8	74.7	+/-1.2	0.38	+/-0.01	83.6	+/-2.9
common 5	165	dssp	2	PHD	74.4	+/-0.9	70.5	+/-1.3	0.34	+/-0.01	80.6	+/-3.1
				PHDpsi	74.6	+/-0.9	70.6	+/-1.3	0.34	+/-0.01	80.6	+/-3.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	182	dssp	1	PSIpred	78.0	+/-0.8	75.8	+/-1.2	0.37	+/-0.01	85.2	+/-2.6
common 6	182	dssp	2	PROFsec	76.8	+/-0.8	75.0	+/-1.1	0.38	+/-0.01	81.3	+/-2.9
common 6	182	dssp	3	PHD	75.0	+/-0.9	70.7	+/-1.2	0.35	+/-0.01	80.8	+/-2.9
				PHDpsi	75.1	+/-0.9	70.8	+/-1.2	0.35	+/-0.01	80.8	+/-2.9