EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	556	128	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	401	95	method/apssp2.html
JPred	167	29	method/jpred.html
JUFO	133	38	method/jufo.html
mlrprdsec	35	12	method/mlrprdsec.html
PHD	485	114	method/phd.html
PHDpsi	479	114	method/phdpsi.html
Porter	38	12	method/porter.html
PROF_king	479	120	method/prof_king.html
PROFsec	482	114	method/profsec.html
Prospect	315	87	method/prospect.html
PSIpred	482	121	method/psipred.html
PSSP	1	1	method/pssp.html
SABLE	193	58	method/sable.html
SABLE2	136	41	method/sable2.html
SAM-T99sec	421	118	method/samt99_sec.html
SCRATCH (SSpro3)	256	73	method/scratch.html
SSpro1	1	1	method/sspro1.html
SSpro2	257	48	method/sspro2.html
SSpro4	107	37	method/sspro4.html
yaspin	118	37	method/yaspin.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 60 proteins and 8 methods (HTML - ASCII)
- set 2: 159 proteins and 6 methods (HTML - ASCII)
- set 3: 159 proteins and 6 methods (HTML - ASCII)
- set 4: 163 proteins and 5 methods (HTML - ASCII)
- set 5: 163 proteins and 5 methods (HTML - ASCII)
- set 6: 180 proteins and 4 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	60	dssp	1	APSSP2	73.7	+/-1.8	73.1	+/-2.3	0.35	+/-0.02	91.7	+/-3.6
				PHD	72.5	+/-1.7	67.6	+/-2.4	0.33	+/-0.02	90.0	+/-3.9
				PHDpsi	72.6	+/-1.7	67.8	+/-2.4	0.34	+/-0.02	88.3	+/-4.2
				PROFsec	75.6	+/-1.8	76.0	+/-2.3	0.38	+/-0.03	85.0	+/-4.6
				PSIpred	76.6	+/-1.7	76.2	+/-2.5	0.36	+/-0.03	88.3	+/-4.2
				SAM-T99sec	76.3	+/-1.5	72.9	+/-1.9	0.38	+/-0.02	91.7	+/-3.6
common 1	60	dssp	2	PROF_king	70.4	+/-1.9	66.9	+/-2.5	0.32	+/-0.02	86.7	+/-4.4
				Prospect	69.2	+/-2.0	66.4	+/-2.7	0.31	+/-0.02	85.0	+/-4.6

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	159	dssp	1	PSIpred	77.8	+/-0.9	76.0	+/-1.3	0.37	+/-0.01	84.9	+/-2.8
				SAM-T99sec	77.5	+/-0.8	74.9	+/-1.2	0.38	+/-0.01	83.0	+/-3.0
common 2	159	dssp	2	PROFsec	76.4	+/-0.9	75.4	+/-1.2	0.37	+/-0.01	81.1	+/-3.1
common 2	159	dssp	3	PHD	74.5	+/-0.9	70.9	+/-1.3	0.34	+/-0.01	80.5	+/-3.2
				PHDpsi	74.6	+/-0.9	71.0	+/-1.3	0.34	+/-0.01	80.5	+/-3.2
common 2	159	dssp	4	PROF_king	72.1	+/-1.0	67.6	+/-1.4	0.31	+/-0.01	79.2	+/-3.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	159	dssp	1	PSIpred	77.8	+/-0.9	76.0	+/-1.3	0.37	+/-0.01	84.9	+/-2.8
				SAM-T99sec	77.5	+/-0.8	74.9	+/-1.2	0.38	+/-0.01	83.0	+/-3.0
common 3	159	dssp	2	PROFsec	76.4	+/-0.9	75.4	+/-1.2	0.37	+/-0.01	81.1	+/-3.1
common 3	159	dssp	3	PHD	74.5	+/-0.9	70.9	+/-1.3	0.34	+/-0.01	80.5	+/-3.2
				PHDpsi	74.6	+/-0.9	71.0	+/-1.3	0.34	+/-0.01	80.5	+/-3.2
common 3	159	dssp	4	PROF_king	72.1	+/-1.0	67.6	+/-1.4	0.31	+/-0.01	79.2	+/-3.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	163	dssp	1	PROFsec	76.6	+/-0.9	75.4	+/-1.2	0.38	+/-0.01	81.6	+/-3.0
				PSIpred	77.6	+/-0.9	75.9	+/-1.3	0.37	+/-0.01	85.3	+/-2.8
				SAM-T99sec	77.4	+/-0.8	74.7	+/-1.2	0.38	+/-0.01	83.4	+/-2.9
common 4	163	dssp	2	PHD	74.5	+/-0.9	70.6	+/-1.3	0.34	+/-0.01	81.0	+/-3.1
				PHDpsi	74.6	+/-0.9	70.7	+/-1.3	0.34	+/-0.01	81.0	+/-3.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	163	dssp	1	PROFsec	76.6	+/-0.9	75.4	+/-1.2	0.38	+/-0.01	81.6	+/-3.0
				PSIpred	77.6	+/-0.9	75.9	+/-1.3	0.37	+/-0.01	85.3	+/-2.8
				SAM-T99sec	77.4	+/-0.8	74.7	+/-1.2	0.38	+/-0.01	83.4	+/-2.9
common 5	163	dssp	2	PHD	74.5	+/-0.9	70.6	+/-1.3	0.34	+/-0.01	81.0	+/-3.1
				PHDpsi	74.6	+/-0.9	70.7	+/-1.3	0.34	+/-0.01	81.0	+/-3.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	180	dssp	1	PSIpred	78.0	+/-0.9	75.9	+/-1.2	0.37	+/-0.01	85.0	+/-2.7
common 6	180	dssp	2	PROFsec	76.8	+/-0.8	75.1	+/-1.1	0.38	+/-0.01	81.1	+/-2.9
common 6	180	dssp	3	PHD	75.0	+/-0.9	70.8	+/-1.2	0.35	+/-0.01	81.1	+/-2.9
				PHDpsi	75.2	+/-0.9	70.9	+/-1.2	0.35	+/-0.01	81.1	+/-2.9