EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	535	121	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	395	91	method/apssp2.html
JPred	167	29	method/jpred.html
JUFO	133	38	method/jufo.html
mlrprdsec	17	5	method/mlrprdsec.html
PHD	464	107	method/phd.html
PHDpsi	458	107	method/phdpsi.html
Porter	17	5	method/porter.html
PROF_king	459	113	method/prof_king.html
PROFsec	461	107	method/profsec.html
Prospect	315	87	method/prospect.html
PSIpred	461	114	method/psipred.html
PSSP	1	1	method/pssp.html
SABLE	174	51	method/sable.html
SABLE2	117	34	method/sable2.html
SAM-T99sec	414	114	method/samt99_sec.html
SCRATCH (SSpro3)	235	66	method/scratch.html
SSpro1	1	1	method/sspro1.html
SSpro2	257	48	method/sspro2.html
SSpro4	86	30	method/sspro4.html
yaspin	98	30	method/yaspin.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 60 proteins and 8 methods (HTML - ASCII)
- set 2: 152 proteins and 6 methods (HTML - ASCII)
- set 3: 152 proteins and 6 methods (HTML - ASCII)
- set 4: 156 proteins and 5 methods (HTML - ASCII)
- set 5: 156 proteins and 5 methods (HTML - ASCII)
- set 6: 159 proteins and 4 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	60	dssp	1	APSSP2	73.7	+/-1.8	73.1	+/-2.3	0.35	+/-0.02	91.7	+/-3.6
				PHD	72.5	+/-1.7	67.6	+/-2.4	0.33	+/-0.02	90.0	+/-3.9
				PHDpsi	72.6	+/-1.7	67.8	+/-2.4	0.34	+/-0.02	88.3	+/-4.2
				PROFsec	75.6	+/-1.8	76.0	+/-2.3	0.38	+/-0.03	85.0	+/-4.6
				PSIpred	76.6	+/-1.7	76.2	+/-2.5	0.36	+/-0.03	88.3	+/-4.2
				SAM-T99sec	76.3	+/-1.5	72.9	+/-1.9	0.38	+/-0.02	91.7	+/-3.6
common 1	60	dssp	2	PROF_king	70.4	+/-1.9	66.9	+/-2.5	0.32	+/-0.02	86.7	+/-4.4
				Prospect	69.2	+/-2.0	66.4	+/-2.7	0.31	+/-0.02	85.0	+/-4.6

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	152	dssp	1	PSIpred	77.8	+/-0.9	76.3	+/-1.3	0.38	+/-0.02	84.2	+/-3.0
				SAM-T99sec	77.8	+/-0.8	75.4	+/-1.2	0.39	+/-0.01	84.2	+/-3.0
common 2	152	dssp	2	PROFsec	76.3	+/-0.9	75.4	+/-1.3	0.38	+/-0.01	80.9	+/-3.2
common 2	152	dssp	3	PHD	74.4	+/-0.9	71.0	+/-1.3	0.35	+/-0.01	80.9	+/-3.2
				PHDpsi	74.6	+/-0.9	71.1	+/-1.3	0.35	+/-0.01	80.9	+/-3.2
common 2	152	dssp	4	PROF_king	72.2	+/-1.0	68.0	+/-1.4	0.32	+/-0.01	78.9	+/-3.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	152	dssp	1	PSIpred	77.8	+/-0.9	76.3	+/-1.3	0.38	+/-0.02	84.2	+/-3.0
				SAM-T99sec	77.8	+/-0.8	75.4	+/-1.2	0.39	+/-0.01	84.2	+/-3.0
common 3	152	dssp	2	PROFsec	76.3	+/-0.9	75.4	+/-1.3	0.38	+/-0.01	80.9	+/-3.2
common 3	152	dssp	3	PHD	74.4	+/-0.9	71.0	+/-1.3	0.35	+/-0.01	80.9	+/-3.2
				PHDpsi	74.6	+/-0.9	71.1	+/-1.3	0.35	+/-0.01	80.9	+/-3.2
common 3	152	dssp	4	PROF_king	72.2	+/-1.0	68.0	+/-1.4	0.32	+/-0.01	78.9	+/-3.3

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	156	dssp	1	PSIpred	77.7	+/-0.9	76.2	+/-1.3	0.38	+/-0.02	84.6	+/-2.9
				SAM-T99sec	77.7	+/-0.9	75.2	+/-1.2	0.39	+/-0.01	84.6	+/-2.9
common 4	156	dssp	2	PROFsec	76.6	+/-0.9	75.4	+/-1.2	0.38	+/-0.01	81.4	+/-3.1
common 4	156	dssp	3	PHD	74.5	+/-0.9	70.7	+/-1.3	0.35	+/-0.01	81.4	+/-3.1
				PHDpsi	74.6	+/-0.9	70.8	+/-1.3	0.35	+/-0.01	81.4	+/-3.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	156	dssp	1	PSIpred	77.7	+/-0.9	76.2	+/-1.3	0.38	+/-0.02	84.6	+/-2.9
				SAM-T99sec	77.7	+/-0.9	75.2	+/-1.2	0.39	+/-0.01	84.6	+/-2.9
common 5	156	dssp	2	PROFsec	76.6	+/-0.9	75.4	+/-1.2	0.38	+/-0.01	81.4	+/-3.1
common 5	156	dssp	3	PHD	74.5	+/-0.9	70.7	+/-1.3	0.35	+/-0.01	81.4	+/-3.1
				PHDpsi	74.6	+/-0.9	70.8	+/-1.3	0.35	+/-0.01	81.4	+/-3.1

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	159	dssp	1	PSIpred	77.6	+/-0.9	76.2	+/-1.3	0.38	+/-0.02	84.3	+/-2.9
common 6	159	dssp	2	PROFsec	76.4	+/-0.9	75.2	+/-1.2	0.38	+/-0.01	81.1	+/-3.1
common 6	159	dssp	3	PHD	74.4	+/-0.9	70.7	+/-1.3	0.34	+/-0.01	81.1	+/-3.1
				PHDpsi	74.5	+/-0.9	70.8	+/-1.3	0.35	+/-0.01	81.1	+/-3.1