EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	530	120	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	395	91	method/apssp2.html
JPred	167	29	method/jpred.html
JUFO	133	38	method/jufo.html
mlrprdsec	12	4	method/mlrprdsec.html
PHD	459	106	method/phd.html
PHDpsi	453	106	method/phdpsi.html
Porter	12	4	method/porter.html
PROF_king	454	112	method/prof_king.html
PROFsec	456	106	method/profsec.html
Prospect	315	87	method/prospect.html
PSIpred	456	113	method/psipred.html
PSSP	1	1	method/pssp.html
SABLE	169	50	method/sable.html
SABLE2	112	33	method/sable2.html
SAM-T99sec	409	113	method/samt99_sec.html
SCRATCH (SSpro3)	230	65	method/scratch.html
SSpro1	1	1	method/sspro1.html
SSpro2	257	48	method/sspro2.html
SSpro4	81	29	method/sspro4.html
yaspin	93	29	method/yaspin.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 60 proteins and 8 methods (HTML - ASCII)
- set 2: 147 proteins and 6 methods (HTML - ASCII)
- set 3: 147 proteins and 6 methods (HTML - ASCII)
- set 4: 151 proteins and 5 methods (HTML - ASCII)
- set 5: 151 proteins and 5 methods (HTML - ASCII)
- set 6: 154 proteins and 4 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	60	dssp	1	APSSP2	73.7	+/-1.8	73.1	+/-2.3	0.35	+/-0.02	91.7	+/-3.6
				PHD	72.5	+/-1.7	67.6	+/-2.4	0.33	+/-0.02	90.0	+/-3.9
				PHDpsi	72.6	+/-1.7	67.8	+/-2.4	0.34	+/-0.02	88.3	+/-4.2
				PROFsec	75.6	+/-1.8	76.0	+/-2.3	0.38	+/-0.03	85.0	+/-4.6
				PSIpred	76.6	+/-1.7	76.2	+/-2.5	0.36	+/-0.03	88.3	+/-4.2
				SAM-T99sec	76.3	+/-1.5	72.9	+/-1.9	0.38	+/-0.02	91.7	+/-3.6
common 1	60	dssp	2	PROF_king	70.4	+/-1.9	66.9	+/-2.5	0.32	+/-0.02	86.7	+/-4.4
				Prospect	69.2	+/-2.0	66.4	+/-2.7	0.31	+/-0.02	85.0	+/-4.6

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	147	dssp	1	PSIpred	77.9	+/-0.9	76.4	+/-1.4	0.38	+/-0.02	84.4	+/-3.0
				SAM-T99sec	77.8	+/-0.9	75.5	+/-1.2	0.39	+/-0.01	84.4	+/-3.0
common 2	147	dssp	2	PROFsec	76.3	+/-0.9	75.5	+/-1.3	0.38	+/-0.01	81.0	+/-3.2
common 2	147	dssp	3	PHD	74.5	+/-1.0	71.1	+/-1.3	0.35	+/-0.01	81.0	+/-3.2
				PHDpsi	74.6	+/-1.0	71.2	+/-1.3	0.35	+/-0.01	81.0	+/-3.2
common 2	147	dssp	4	PROF_king	72.2	+/-1.0	68.1	+/-1.4	0.32	+/-0.02	78.9	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	147	dssp	1	PSIpred	77.9	+/-0.9	76.4	+/-1.4	0.38	+/-0.02	84.4	+/-3.0
				SAM-T99sec	77.8	+/-0.9	75.5	+/-1.2	0.39	+/-0.01	84.4	+/-3.0
common 3	147	dssp	2	PROFsec	76.3	+/-0.9	75.5	+/-1.3	0.38	+/-0.01	81.0	+/-3.2
common 3	147	dssp	3	PHD	74.5	+/-1.0	71.1	+/-1.3	0.35	+/-0.01	81.0	+/-3.2
				PHDpsi	74.6	+/-1.0	71.2	+/-1.3	0.35	+/-0.01	81.0	+/-3.2
common 3	147	dssp	4	PROF_king	72.2	+/-1.0	68.1	+/-1.4	0.32	+/-0.02	78.9	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	151	dssp	1	PSIpred	77.8	+/-0.9	76.3	+/-1.4	0.38	+/-0.02	84.8	+/-2.9
				SAM-T99sec	77.7	+/-0.9	75.3	+/-1.2	0.39	+/-0.01	84.8	+/-2.9
common 4	151	dssp	2	PROFsec	76.5	+/-0.9	75.5	+/-1.3	0.38	+/-0.02	81.5	+/-3.2
common 4	151	dssp	3	PHD	74.5	+/-1.0	70.8	+/-1.4	0.35	+/-0.01	81.5	+/-3.2
				PHDpsi	74.6	+/-1.0	70.9	+/-1.4	0.35	+/-0.01	81.5	+/-3.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	151	dssp	1	PSIpred	77.8	+/-0.9	76.3	+/-1.4	0.38	+/-0.02	84.8	+/-2.9
				SAM-T99sec	77.7	+/-0.9	75.3	+/-1.2	0.39	+/-0.01	84.8	+/-2.9
common 5	151	dssp	2	PROFsec	76.5	+/-0.9	75.5	+/-1.3	0.38	+/-0.02	81.5	+/-3.2
common 5	151	dssp	3	PHD	74.5	+/-1.0	70.8	+/-1.4	0.35	+/-0.01	81.5	+/-3.2
				PHDpsi	74.6	+/-1.0	70.9	+/-1.4	0.35	+/-0.01	81.5	+/-3.2

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	154	dssp	1	PSIpred	77.7	+/-0.9	76.3	+/-1.3	0.38	+/-0.02	84.4	+/-2.9
common 6	154	dssp	2	PROFsec	76.3	+/-0.9	75.3	+/-1.3	0.38	+/-0.02	81.2	+/-3.2
common 6	154	dssp	3	PHD	74.4	+/-1.0	70.7	+/-1.3	0.35	+/-0.01	81.2	+/-3.2
				PHDpsi	74.6	+/-1.0	70.8	+/-1.3	0.35	+/-0.01	81.2	+/-3.2