EVA summary for category sec (1)

Contents

Method	Nprot	Nweek	Detailed results for method
ALL	519	117	method/index.html

APSSP	0	0	method/apssp.html
APSSP2	393	90	method/apssp2.html
JPred	167	29	method/jpred.html
JUFO	133	38	method/jufo.html
mlrprdsec	0	0	method/mlrprdsec.html
PHD	448	103	method/phd.html
PHDpsi	442	103	method/phdpsi.html
Porter	1	1	method/porter.html
PROF_king	445	109	method/prof_king.html
PROFsec	445	103	method/profsec.html
Prospect	315	87	method/prospect.html
PSIpred	445	110	method/psipred.html
PSSP	1	1	method/pssp.html
SABLE	158	47	method/sable.html
SABLE2	101	30	method/sable2.html
SAM-T99sec	398	110	method/samt99_sec.html
SCRATCH (SSpro3)	219	62	method/scratch.html
SSpro1	1	1	method/sspro1.html
SSpro2	257	48	method/sspro2.html
SSpro4	70	26	method/sspro4.html
yaspin	82	26	method/yaspin.html

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:
- set 1: 60 proteins and 8 methods (HTML - ASCII)
- set 2: 138 proteins and 6 methods (HTML - ASCII)
- set 3: 138 proteins and 6 methods (HTML - ASCII)
- set 4: 140 proteins and 5 methods (HTML - ASCII)
- set 5: 140 proteins and 5 methods (HTML - ASCII)
- set 6: 143 proteins and 4 methods (HTML - ASCII)
Detail level 1 (this file) as ASCII

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	60	dssp	1	APSSP2	73.7	+/-1.8	73.1	+/-2.3	0.35	+/-0.02	91.7	+/-3.6
				PHD	72.5	+/-1.7	67.6	+/-2.4	0.33	+/-0.02	90.0	+/-3.9
				PHDpsi	72.6	+/-1.7	67.8	+/-2.4	0.34	+/-0.02	88.3	+/-4.2
				PROFsec	75.6	+/-1.8	76.0	+/-2.3	0.38	+/-0.03	85.0	+/-4.6
				PSIpred	76.6	+/-1.7	76.2	+/-2.5	0.36	+/-0.03	88.3	+/-4.2
				SAM-T99sec	76.3	+/-1.5	72.9	+/-1.9	0.38	+/-0.02	91.7	+/-3.6
common 1	60	dssp	2	PROF_king	70.4	+/-1.9	66.9	+/-2.5	0.32	+/-0.02	86.7	+/-4.4
				Prospect	69.2	+/-2.0	66.4	+/-2.7	0.31	+/-0.02	85.0	+/-4.6

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	138	dssp	1	PSIpred	77.9	+/-1.0	76.2	+/-1.4	0.38	+/-0.02	83.3	+/-3.2
				SAM-T99sec	77.8	+/-0.9	75.5	+/-1.3	0.39	+/-0.01	84.1	+/-3.1
common 2	138	dssp	2	PROFsec	76.3	+/-1.0	75.3	+/-1.4	0.38	+/-0.02	80.4	+/-3.4
common 2	138	dssp	3	PHD	74.3	+/-1.0	71.0	+/-1.4	0.34	+/-0.02	79.7	+/-3.4
				PHDpsi	74.5	+/-1.0	71.1	+/-1.4	0.35	+/-0.02	79.7	+/-3.4
common 2	138	dssp	4	PROF_king	72.6	+/-1.0	68.4	+/-1.5	0.32	+/-0.02	80.4	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	138	dssp	1	PSIpred	77.9	+/-1.0	76.2	+/-1.4	0.38	+/-0.02	83.3	+/-3.2
				SAM-T99sec	77.8	+/-0.9	75.5	+/-1.3	0.39	+/-0.01	84.1	+/-3.1
common 3	138	dssp	2	PROFsec	76.3	+/-1.0	75.3	+/-1.4	0.38	+/-0.02	80.4	+/-3.4
common 3	138	dssp	3	PHD	74.3	+/-1.0	71.0	+/-1.4	0.34	+/-0.02	79.7	+/-3.4
				PHDpsi	74.5	+/-1.0	71.1	+/-1.4	0.35	+/-0.02	79.7	+/-3.4
common 3	138	dssp	4	PROF_king	72.6	+/-1.0	68.4	+/-1.5	0.32	+/-0.02	80.4	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	140	dssp	1	PSIpred	77.7	+/-1.0	76.2	+/-1.4	0.38	+/-0.02	83.6	+/-3.1
				SAM-T99sec	77.7	+/-0.9	75.4	+/-1.3	0.39	+/-0.02	84.3	+/-3.1
common 4	140	dssp	2	PROFsec	76.4	+/-1.0	75.3	+/-1.4	0.38	+/-0.02	80.7	+/-3.3
common 4	140	dssp	3	PHD	74.3	+/-1.0	70.9	+/-1.4	0.35	+/-0.02	80.0	+/-3.4
				PHDpsi	74.5	+/-1.0	71.0	+/-1.4	0.35	+/-0.02	80.0	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 5			Sorted alphabetically for identical ranks!		MORE SCORES
common 5	140	dssp	1	PSIpred	77.7	+/-1.0	76.2	+/-1.4	0.38	+/-0.02	83.6	+/-3.1
				SAM-T99sec	77.7	+/-0.9	75.4	+/-1.3	0.39	+/-0.02	84.3	+/-3.1
common 5	140	dssp	2	PROFsec	76.4	+/-1.0	75.3	+/-1.4	0.38	+/-0.02	80.7	+/-3.3
common 5	140	dssp	3	PHD	74.3	+/-1.0	70.9	+/-1.4	0.35	+/-0.02	80.0	+/-3.4
				PHDpsi	74.5	+/-1.0	71.0	+/-1.4	0.35	+/-0.02	80.0	+/-3.4

subset	nprot	sots	rank	method	Q3	ERRsigQ3	sov	ERRsigsov	info	ERRsiginfo	class	ERRsigclass
Set 6			Sorted alphabetically for identical ranks!		MORE SCORES
common 6	143	dssp	1	PSIpred	77.6	+/-1.0	76.2	+/-1.4	0.38	+/-0.02	83.2	+/-3.1
common 6	143	dssp	2	PROFsec	76.2	+/-1.0	75.0	+/-1.4	0.37	+/-0.02	80.4	+/-3.3
common 6	143	dssp	3	PHD	74.3	+/-1.0	70.9	+/-1.4	0.34	+/-0.02	79.7	+/-3.4
				PHDpsi	74.4	+/-1.0	71.0	+/-1.4	0.35	+/-0.02	79.7	+/-3.4