EVA: Detailed information for proteins added on: 2006_03_01

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	DSSP header	DSSP compnd	DSSP source	DSSP author
2006_03_01	2aql	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: MORTALITY FACTOR 4-LIKE PROTEIN 1; CHAIN: A, B; SYNONYM: MORF-RELATED GENE 15 PROTEIN, TRANSCRIPTION FACTOR-LIKE PROTEIN MRG15, MSL3-1 PROTEIN; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: MORF4L1, MRG15;	F.A.QUIOCHO,B.R.BOWMAN
2006_03_01	2d1p	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSLATION	MOLECULE: HYPOTHETICAL UPF0163 PROTEIN YHEN; CHAIN: A, D, G; SYNONYM: TUSD; ENGINEERED: YES; MOLECULE: HYPOTHETICAL UPF0116 PROTEIN YHEM; CHAIN: B, E, H; SYNONYM: TUSC; ENGINEERED: YES; MOLECULE: HYPOTHETICAL PROTEIN YHEL; CHAIN: C, F, I; SYNONYM: TUSB; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; GENE: YHEN; ESCHERICHIA COLI; BACTERIA; GENE: YHEM; ESCHERICHIA COLI; BACTERIA; GENE: YHEL;	T.NUMATA,S.FUKAI,Y.IKEUCHI,T.SUZUKI,O.NUREKI
2006_03_01	2byf	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	LIPASE	MOLECULE: PHOSPHOLIPASE C, EPSILON 1; CHAIN: A; FRAGMENT: RA2 DOMAIN, RESIDUES 2131-2246; SYNONYM: PHOSPHOLIPASE C EPSILON; ENGINEERED: YES; MUTATION: YES	HOMO SAPIENS; HUMAN;	T.D.BUNNEY,R.HARRIS,N.L.GANDARILLAS,M.B.JOSEPHS,S.M.ROE, H.F.PATERSON,F.RODRIGUES-LIMA,D.ESPOSITO,P.GIESCHIK, L.H.PEARL,P.C.DRISCOLL,M.KATAN

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
DSSP header	DSSP 'HEADER' field
DSSP compnd	DSSP 'COMPND' field
DSSP source	DSSP 'SOURCE' field
DSSP author	DSSP 'AUTHOR' field